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Mutant Information

Mutant Name	FN1136-19-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1136-19-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	946207	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	15227387	C-T	Homo	INTERGENIC
SBS	Chr2	15544685	T-A	Hetero	INTERGENIC
SBS	Chr2	25726893	A-G	Homo	INTERGENIC
SBS	Chr3	14413851	T-A	Homo	INTERGENIC
SBS	Chr3	17807485	G-A	Hetero	INTERGENIC
SBS	Chr3	22042839	G-A	Hetero	INTERGENIC
SBS	Chr3	32077959	C-T	Hetero	INTERGENIC
SBS	Chr4	6349187	T-A	Hetero	INTERGENIC
SBS	Chr4	7482507	C-G	Homo	INTERGENIC
SBS	Chr4	12805757	G-T	Homo	INTERGENIC
SBS	Chr4	18493470	G-A	Homo	INTERGENIC
SBS	Chr5	3738474	G-A	Homo	INTERGENIC
SBS	Chr5	17179220	C-A	Hetero	INTERGENIC
SBS	Chr6	25344339	A-G	Hetero	INTERGENIC
SBS	Chr6	26581139	G-C	Homo	INTERGENIC
SBS	Chr6	28969267	C-T	Hetero	INTERGENIC
SBS	Chr7	2092639	C-G	Homo	INTERGENIC
SBS	Chr7	4922495	G-A	Hetero	INTERGENIC
SBS	Chr7	14563918	C-T	Homo	INTERGENIC
SBS	Chr8	10719206	C-T	Homo	INTERGENIC
SBS	Chr8	24677316	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g192600
SBS	Chr10	9855153	C-A	Hetero	INTERGENIC
SBS	Chr10	10089543	G-C	Hetero	INTERGENIC
SBS	Chr11	3020493	G-A	Homo	INTERGENIC
SBS	Chr11	6908291	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g079910
SBS	Chr11	14116887	G-A	Homo	INTERGENIC
SBS	Chr11	20210598	T-C	Homo	INTERGENIC
SBS	Chr12	5688279	C-T	Hetero	INTERGENIC
SBS	Chr12	6864646	T-C	Hetero	UTR_5_PRIME
SBS	Chr12	9915338	C-A	Hetero	INTERGENIC
SBS	Chr12	24275819	G-A	Hetero	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1314051	1314058	7
Deletion	Chr1	4468001	4480000	11999	OsKitaake01g059500
Deletion	Chr8	5170618	5170620	2
Deletion	Chr11	5498677	5498687	10
Deletion	Chr3	6090001	6108000	17999	OsKitaake03g087400
Deletion	Chr5	6355126	6355135	9
Deletion	Chr8	7605799	7605801	2
Deletion	Chr4	7786334	7786335	1
Deletion	Chr2	10526260	10526266	6
Deletion	Chr12	14328238	14328242	4
Deletion	Chr2	16310001	16320000	9999	OsKitaake02g167700
Deletion	Chr7	16942001	17003000	60999	5
Deletion	Chr7	18968407	18968416	9
Deletion	Chr11	19272516	19272531	15
Deletion	Chr2	19548902	19548904	2
Deletion	Chr12	19582289	19582291	2
Deletion	Chr10	21392301	21392303	2
Deletion	Chr7	22588681	22588749	68
Deletion	Chr7	22895001	22905000	9999	OsKitaake07g197200
Deletion	Chr10	23140001	23163000	22999	OsKitaake10g195250
Deletion	Chr11	24342192	24342230	38
Deletion	Chr2	24407001	24429000	21999
Deletion	Chr4	26662393	26662395	2
Deletion	Chr5	27129578	27129579	1
Deletion	Chr6	27916001	27933000	16999	OsKitaake06g253400
Deletion	Chr2	27981443	27981448	5
Deletion	Chr1	33452001	33472000	19999	OsKitaake01g342500
Deletion	Chr2	34904701	34904703	2
Deletion	Chr1	39862188	39862298	110

Insertions: 11

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	8456384	8456388	3
Insertion	Chr1	8894379	8894382	2
Insertion	Chr1	16198250	16198252	1
Insertion	Chr2	18113973	18113976	2
Insertion	Chr2	32643895	32643898	2
Insertion	Chr6	6770631	6770634	2
Insertion	Chr6	16647037	16647040	2
Insertion	Chr6	27839039	27839042	2
Insertion	Chr10	5335761	5335764	2
Insertion	Chr10	18436567	18436570	2
Insertion	Chr12	17393184	17393187	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1215534	Chr3	10778767	2
Translocation	Chr8	1216616	Chr3	10778762	2
Translocation	Chr6	1984102	Chr1	29144197	OsKitaake06g025000
Translocation	Chr6	1984450	Chr1	29144188	OsKitaake06g025000