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Mutant Information

Mutant Name	FN1136-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1136-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11874987	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	21717040	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g209500
SBS	Chr2	15227387	C-T	Hetero	INTERGENIC
SBS	Chr2	27513213	G-A	Hetero	INTRON
SBS	Chr2	35968038	A-C	Hetero	INTERGENIC
SBS	Chr3	9311614	A-T	Hetero	INTERGENIC
SBS	Chr3	11174884	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g153500
SBS	Chr3	28310978	G-A	Homo	INTERGENIC
SBS	Chr3	34652801	C-T	Homo	UTR_3_PRIME
SBS	Chr4	6991176	A-G	Hetero	INTERGENIC
SBS	Chr4	16975809	T-C	Hetero	INTERGENIC
SBS	Chr4	18493470	G-A	Homo	INTERGENIC
SBS	Chr4	34220975	C-T	Hetero	INTERGENIC
SBS	Chr5	11522453	G-C	Hetero	INTERGENIC
SBS	Chr7	1575310	G-A	Hetero	UTR_5_PRIME
SBS	Chr8	5875673	G-A	Hetero	INTERGENIC
SBS	Chr8	5876495	T-A	Hetero	UTR_3_PRIME
SBS	Chr9	7950398	A-G	Hetero	INTERGENIC
SBS	Chr10	371725	C-A	Hetero	INTERGENIC
SBS	Chr10	759561	A-C	Hetero	INTERGENIC
SBS	Chr10	10180472	A-G	Hetero	INTERGENIC
SBS	Chr10	18738564	C-T	Hetero	INTERGENIC
SBS	Chr10	21758566	G-C	Hetero	INTERGENIC
SBS	Chr11	17091611	C-T	Hetero	INTERGENIC
SBS	Chr12	4209384	G-A	Hetero	INTERGENIC
SBS	Chr12	5119465	C-T	Hetero	INTRON

Deletions: 6

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	10178481	10178482	1
Deletion	Chr2	19150795	19150796	1
Deletion	Chr4	19436001	19447000	10999	OsKitaake04g099601
Deletion	Chr5	23442429	23442430	1	OsKitaake05g196400
Deletion	Chr6	27843069	27843081	12
Deletion	Chr3	31054587	31054595	8	OsKitaake03g325800

Insertions: 3

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	24639318	24639321	2
Insertion	Chr1	41606577	41606585	7
Insertion	Chr12	11713778	11713780	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	8810904	8961757
Inversion	Chr1	8961777	9169324	OsKitaake01g117900

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17964830	Chr8	26255496	OsKitaake09g137201
Translocation	Chr9	17964836	Chr8	26255493	OsKitaake09g137201
Translocation	Chr6	19886892	Chr2	24860793