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| Mutant Information |
|---|
| Mutant Name | FN1140-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1140-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10323845 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33018517 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 33018520 | T-G | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 36139658 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 40403658 | A-T | Homo | INTRON | |
| SBS | Chr2 | 11728824 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 35767154 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 5794641 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 24073626 | C-G | Hetero | INTRON | |
| SBS | Chr3 | 24986284 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 31221291 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 35946189 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 37357518 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 32235297 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 5701281 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 12336847 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 24569638 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 4765509 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 7943578 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 14704008 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 3184670 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 3184671 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 3717556 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 9263403 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 11256102 | C-G | Hetero | INTRON | |
| SBS | Chr7 | 11896833 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 21153045 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6723067 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 6723068 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13417704 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 17203035 | A-G | Homo | INTRON | |
| SBS | Chr11 | 20251867 | C-A | Homo | INTRON | |
| SBS | Chr11 | 20251868 | C-A | Homo | INTRON | |
| SBS | Chr11 | 20251869 | G-A | Homo | INTRON | |
| SBS | Chr11 | 24807073 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 5092269 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5615013 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g068500 |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 8221637 | 8221986 | 349 | OsKitaake04g042800 |
| Deletion | Chr9 | 9787518 | 9787519 | 1 | |
| Deletion | Chr2 | 14002684 | 14002686 | 2 | |
| Deletion | Chr8 | 18284469 | 18284471 | 2 | |
| Deletion | Chr11 | 19741418 | 19741432 | 14 | |
| Deletion | Chr3 | 21661397 | 21661400 | 3 | |
| Deletion | Chr4 | 24125478 | 24125480 | 2 | |
| Deletion | Chr6 | 24501973 | 24501975 | 2 | |
| Deletion | Chr2 | 27158728 | 27158730 | 2 | OsKitaake02g272700 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 11870454 | 11870456 | 1 | |
| Insertion | Chr4 | 14122767 | 14122770 | 2 | |
| Insertion | Chr11 | 6420656 | 6420659 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 10462571 | 10973018 | 2 |
| Inversion | Chr11 | 10904705 | 10973019 | OsKitaake11g106100 |
| Inversion | Chr4 | 12393683 | 12401052 | |
| Inversion | Chr4 | 12393790 | 12401074 | |
| Inversion | Chr7 | 24547155 | 24547331 | OsKitaake07g218700 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 7869770 | Chr3 | 27152834 | OsKitaake03g279700 |
| Translocation | Chr8 | 7871234 | Chr3 | 27152819 | OsKitaake03g279700 |