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Mutant Information

Mutant Name	FN1151-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1151-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3369584 G-A Homo INTERGENIC
SBS Chr1 9332540 T-C Hetero INTERGENIC
SBS Chr1 37909834 G-A Hetero INTERGENIC
SBS Chr1 40772966 G-A Homo INTRON
SBS Chr1 41745140 G-T Hetero INTERGENIC
SBS Chr2 19740662 T-G Hetero INTRON
SBS Chr2 23774375 A-G Homo INTERGENIC
SBS Chr2 30538478 T-A Homo INTERGENIC
SBS Chr3 19924868 A-G Hetero INTERGENIC
SBS Chr4 2644025 A-T Hetero INTERGENIC
SBS Chr4 4665697 T-C Hetero INTERGENIC
SBS Chr4 8515551 G-A Hetero INTERGENIC
SBS Chr5 1609064 G-A Homo INTERGENIC
SBS Chr5 16775557 G-A Hetero INTERGENIC
SBS Chr6 4345192 G-T Hetero INTERGENIC
SBS Chr6 9630902 T-C Homo UTR_5_PRIME
SBS Chr6 24205135 T-A Homo INTERGENIC
SBS Chr6 24684255 C-T Homo INTERGENIC
SBS Chr7 13091773 A-T Hetero SYNONYMOUS_CODING
SBS Chr7 15390052 A-G Hetero INTERGENIC
SBS Chr8 343771 G-C Hetero INTERGENIC
SBS Chr8 19444506 C-T Hetero INTERGENIC
SBS Chr9 11191719 C-G Hetero INTERGENIC
SBS Chr9 11711577 C-T Hetero INTERGENIC
SBS Chr9 12037676 G-A Hetero INTRON
SBS Chr9 14540755 C-T Homo INTERGENIC
SBS Chr9 19785867 A-G Homo UTR_3_PRIME
SBS Chr11 719476 G-A Hetero INTERGENIC
SBS Chr11 2466291 G-A Hetero INTERGENIC
SBS Chr11 25293374 G-A Hetero UTR_5_PRIME
SBS Chr12 2709831 A-G Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1041676 1041684 8
Deletion Chr11 8033414 8033415 1
Deletion Chr11 9413423 9413426 3
Deletion Chr8 17828200 17828201 1
Deletion Chr5 19695001 19796000 100999 17
Deletion Chr10 21541824 21541833 9
Deletion Chr10 22147508 22147515 7
Deletion Chr2 23626471 23626478 7
Deletion Chr1 26588174 26588175 1
Deletion Chr4 30680840 30680841 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 18420497 18420500 2
Insertion Chr7 4036415 4036418 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 15156541 15271416
Inversion Chr10 15159527 15271421 OsKitaake10g096100
Inversion Chr1 42095333 42112079 2
Inversion Chr1 42095339 42112082 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8667988 Chr1 17284462

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3369584	G-A	Homo	INTERGENIC
SBS	Chr1	9332540	T-C	Hetero	INTERGENIC
SBS	Chr1	37909834	G-A	Hetero	INTERGENIC
SBS	Chr1	40772966	G-A	Homo	INTRON
SBS	Chr1	41745140	G-T	Hetero	INTERGENIC
SBS	Chr2	19740662	T-G	Hetero	INTRON
SBS	Chr2	23774375	A-G	Homo	INTERGENIC
SBS	Chr2	30538478	T-A	Homo	INTERGENIC
SBS	Chr3	19924868	A-G	Hetero	INTERGENIC
SBS	Chr4	2644025	A-T	Hetero	INTERGENIC
SBS	Chr4	4665697	T-C	Hetero	INTERGENIC
SBS	Chr4	8515551	G-A	Hetero	INTERGENIC
SBS	Chr5	1609064	G-A	Homo	INTERGENIC
SBS	Chr5	16775557	G-A	Hetero	INTERGENIC
SBS	Chr6	4345192	G-T	Hetero	INTERGENIC
SBS	Chr6	9630902	T-C	Homo	UTR_5_PRIME
SBS	Chr6	24205135	T-A	Homo	INTERGENIC
SBS	Chr6	24684255	C-T	Homo	INTERGENIC
SBS	Chr7	13091773	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	15390052	A-G	Hetero	INTERGENIC
SBS	Chr8	343771	G-C	Hetero	INTERGENIC
SBS	Chr8	19444506	C-T	Hetero	INTERGENIC
SBS	Chr9	11191719	C-G	Hetero	INTERGENIC
SBS	Chr9	11711577	C-T	Hetero	INTERGENIC
SBS	Chr9	12037676	G-A	Hetero	INTRON
SBS	Chr9	14540755	C-T	Homo	INTERGENIC
SBS	Chr9	19785867	A-G	Homo	UTR_3_PRIME
SBS	Chr11	719476	G-A	Hetero	INTERGENIC
SBS	Chr11	2466291	G-A	Hetero	INTERGENIC
SBS	Chr11	25293374	G-A	Hetero	UTR_5_PRIME
SBS	Chr12	2709831	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1041676	1041684	8
Deletion	Chr11	8033414	8033415	1
Deletion	Chr11	9413423	9413426	3
Deletion	Chr8	17828200	17828201	1
Deletion	Chr5	19695001	19796000	100999	17
Deletion	Chr10	21541824	21541833	9
Deletion	Chr10	22147508	22147515	7
Deletion	Chr2	23626471	23626478	7
Deletion	Chr1	26588174	26588175	1
Deletion	Chr4	30680840	30680841	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	15156541	15271416
Inversion	Chr10	15159527	15271421	OsKitaake10g096100
Inversion	Chr1	42095333	42112079	2
Inversion	Chr1	42095339	42112082	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes