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Mutant Information

Mutant Name	FN1152-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1152-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4340771 T-C Hetero INTERGENIC
SBS Chr1 31235089 G-A Hetero INTERGENIC
SBS Chr2 77788 C-A Hetero INTERGENIC
SBS Chr2 29131473 G-T Hetero INTERGENIC
SBS Chr3 1270794 A-G Hetero INTRON
SBS Chr3 17394482 G-A Hetero INTERGENIC
SBS Chr3 28800683 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g298500
SBS Chr3 34904982 T-A Hetero INTERGENIC
SBS Chr4 7452623 C-G Hetero INTERGENIC
SBS Chr4 14565645 G-A Homo INTERGENIC
SBS Chr4 17435841 A-T Hetero INTRON
SBS Chr4 20940055 C-T Hetero INTERGENIC
SBS Chr4 29692037 T-A Hetero INTERGENIC
SBS Chr4 34800958 G-A Hetero INTERGENIC
SBS Chr5 978790 A-T Homo INTERGENIC
SBS Chr5 5297139 C-G Homo INTERGENIC
SBS Chr5 17034577 G-A Hetero INTERGENIC
SBS Chr5 29860489 A-G Hetero INTERGENIC
SBS Chr6 12737998 C-T Hetero INTERGENIC
SBS Chr6 12776461 A-T Hetero INTERGENIC
SBS Chr6 24934171 C-A Homo INTERGENIC
SBS Chr6 28960647 G-A Homo UTR_3_PRIME
SBS Chr7 8211779 C-T Homo INTERGENIC
SBS Chr7 11359015 G-A Hetero INTERGENIC
SBS Chr7 15730582 C-T Hetero INTERGENIC
SBS Chr7 21217212 G-A Homo INTERGENIC
SBS Chr7 27177057 T-C Homo INTERGENIC
SBS Chr7 27177205 A-G Homo INTERGENIC
SBS Chr7 27177213 C-T Homo INTERGENIC
SBS Chr8 8179567 A-G Homo INTERGENIC
SBS Chr9 15532323 A-G Homo INTERGENIC
SBS Chr9 16418781 T-C Homo INTERGENIC
SBS Chr9 19397938 C-T Hetero INTERGENIC
SBS Chr9 21556145 C-T Hetero UTR_3_PRIME
SBS Chr10 6285006 C-A Homo INTERGENIC
SBS Chr10 16091737 C-T Homo INTERGENIC
SBS Chr10 17237537 G-A Hetero INTERGENIC
SBS Chr10 17758271 G-T Hetero INTERGENIC
SBS Chr10 17900429 A-G Hetero INTRON
SBS Chr11 19289342 A-G Homo INTERGENIC
SBS Chr11 27513226 T-C Homo INTERGENIC
SBS Chr12 1027986 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g015500
SBS Chr12 1381521 C-T Hetero INTERGENIC
SBS Chr12 14712655 G-A Hetero INTERGENIC

Deletions: 35

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 6754 7106 352
Deletion Chr5 939842 939863 21
Deletion Chr12 969245 969254 9 OsKitaake12g014100
Deletion Chr2 1615802 1615813 11
Deletion Chr7 1721433 1721438 5
Deletion Chr3 3867156 3867157 1
Deletion Chr6 5767613 5767614 1
Deletion Chr6 5854412 5854417 5
Deletion Chr2 6440777 6440779 2
Deletion Chr4 9311251 9311252 1
Deletion Chr8 9608763 9608765 2 OsKitaake08g090300
Deletion Chr1 10570609 10570622 13
Deletion Chr12 10970837 10970839 2
Deletion Chr11 11414839 11414840 1
Deletion Chr4 13147601 13147602 1
Deletion Chr4 14716977 14716983 6
Deletion Chr9 18677000 18677017 17
Deletion Chr12 18701853 18701855 2
Deletion Chr1 19137038 19137043 5
Deletion Chr1 19170721 19170723 2
Deletion Chr6 19757721 19757723 2
Deletion Chr8 20917189 20917197 8
Deletion Chr7 21505178 21505181 3
Deletion Chr4 21786278 21786279 1 OsKitaake04g124600
Deletion Chr9 22181001 22279000 97999 18
Deletion Chr2 22400976 22400988 12
Deletion Chr3 23474027 23474033 6
Deletion Chr3 23678800 23678824 24
Deletion Chr1 26159316 26159318 2 OsKitaake01g254900
Deletion Chr7 26234682 26234697 15
Deletion Chr6 29190885 29190887 2
Deletion Chr1 32100716 32100726 10
Deletion Chr3 32228804 32228821 17
Deletion Chr3 32321996 32322003 7
Deletion Chr4 33136835 33136872 37

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20510756 20510758 1
Insertion Chr11 29544587 29544590 2
Insertion Chr8 6869344 6869347 2 OsKitaake08g069514

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 29273507 29338759 OsKitaake03g305900
Inversion Chr3 29273521 29341723

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 32025766 Chr2 8821401
Translocation Chr4 32025810 Chr2 8820615

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4340771	T-C	Hetero	INTERGENIC
SBS	Chr1	31235089	G-A	Hetero	INTERGENIC
SBS	Chr2	77788	C-A	Hetero	INTERGENIC
SBS	Chr2	29131473	G-T	Hetero	INTERGENIC
SBS	Chr3	1270794	A-G	Hetero	INTRON
SBS	Chr3	17394482	G-A	Hetero	INTERGENIC
SBS	Chr3	28800683	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g298500
SBS	Chr3	34904982	T-A	Hetero	INTERGENIC
SBS	Chr4	7452623	C-G	Hetero	INTERGENIC
SBS	Chr4	14565645	G-A	Homo	INTERGENIC
SBS	Chr4	17435841	A-T	Hetero	INTRON
SBS	Chr4	20940055	C-T	Hetero	INTERGENIC
SBS	Chr4	29692037	T-A	Hetero	INTERGENIC
SBS	Chr4	34800958	G-A	Hetero	INTERGENIC
SBS	Chr5	978790	A-T	Homo	INTERGENIC
SBS	Chr5	5297139	C-G	Homo	INTERGENIC
SBS	Chr5	17034577	G-A	Hetero	INTERGENIC
SBS	Chr5	29860489	A-G	Hetero	INTERGENIC
SBS	Chr6	12737998	C-T	Hetero	INTERGENIC
SBS	Chr6	12776461	A-T	Hetero	INTERGENIC
SBS	Chr6	24934171	C-A	Homo	INTERGENIC
SBS	Chr6	28960647	G-A	Homo	UTR_3_PRIME
SBS	Chr7	8211779	C-T	Homo	INTERGENIC
SBS	Chr7	11359015	G-A	Hetero	INTERGENIC
SBS	Chr7	15730582	C-T	Hetero	INTERGENIC
SBS	Chr7	21217212	G-A	Homo	INTERGENIC
SBS	Chr7	27177057	T-C	Homo	INTERGENIC
SBS	Chr7	27177205	A-G	Homo	INTERGENIC
SBS	Chr7	27177213	C-T	Homo	INTERGENIC
SBS	Chr8	8179567	A-G	Homo	INTERGENIC
SBS	Chr9	15532323	A-G	Homo	INTERGENIC
SBS	Chr9	16418781	T-C	Homo	INTERGENIC
SBS	Chr9	19397938	C-T	Hetero	INTERGENIC
SBS	Chr9	21556145	C-T	Hetero	UTR_3_PRIME
SBS	Chr10	6285006	C-A	Homo	INTERGENIC
SBS	Chr10	16091737	C-T	Homo	INTERGENIC
SBS	Chr10	17237537	G-A	Hetero	INTERGENIC
SBS	Chr10	17758271	G-T	Hetero	INTERGENIC
SBS	Chr10	17900429	A-G	Hetero	INTRON
SBS	Chr11	19289342	A-G	Homo	INTERGENIC
SBS	Chr11	27513226	T-C	Homo	INTERGENIC
SBS	Chr12	1027986	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g015500
SBS	Chr12	1381521	C-T	Hetero	INTERGENIC
SBS	Chr12	14712655	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	6754	7106	352
Deletion	Chr5	939842	939863	21
Deletion	Chr12	969245	969254	9	OsKitaake12g014100
Deletion	Chr2	1615802	1615813	11
Deletion	Chr7	1721433	1721438	5
Deletion	Chr3	3867156	3867157	1
Deletion	Chr6	5767613	5767614	1
Deletion	Chr6	5854412	5854417	5
Deletion	Chr2	6440777	6440779	2
Deletion	Chr4	9311251	9311252	1
Deletion	Chr8	9608763	9608765	2	OsKitaake08g090300
Deletion	Chr1	10570609	10570622	13
Deletion	Chr12	10970837	10970839	2
Deletion	Chr11	11414839	11414840	1
Deletion	Chr4	13147601	13147602	1
Deletion	Chr4	14716977	14716983	6
Deletion	Chr9	18677000	18677017	17
Deletion	Chr12	18701853	18701855	2
Deletion	Chr1	19137038	19137043	5
Deletion	Chr1	19170721	19170723	2
Deletion	Chr6	19757721	19757723	2
Deletion	Chr8	20917189	20917197	8
Deletion	Chr7	21505178	21505181	3
Deletion	Chr4	21786278	21786279	1	OsKitaake04g124600
Deletion	Chr9	22181001	22279000	97999	18
Deletion	Chr2	22400976	22400988	12
Deletion	Chr3	23474027	23474033	6
Deletion	Chr3	23678800	23678824	24
Deletion	Chr1	26159316	26159318	2	OsKitaake01g254900
Deletion	Chr7	26234682	26234697	15
Deletion	Chr6	29190885	29190887	2
Deletion	Chr1	32100716	32100726	10
Deletion	Chr3	32228804	32228821	17
Deletion	Chr3	32321996	32322003	7
Deletion	Chr4	33136835	33136872	37

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	29273507	29338759	OsKitaake03g305900
Inversion	Chr3	29273521	29341723

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes