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Mutant Information

Mutant Name	FN1154-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1154-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7441876 A-T Hetero INTERGENIC
SBS Chr1 19459119 G-A Hetero INTERGENIC
SBS Chr1 21980311 G-A Hetero INTERGENIC
SBS Chr1 26445747 C-A Hetero INTERGENIC
SBS Chr1 26543421 A-C Hetero UTR_5_PRIME
SBS Chr1 26543422 T-C Hetero UTR_5_PRIME
SBS Chr1 30431432 A-T Hetero INTERGENIC
SBS Chr2 10872405 G-C Homo INTERGENIC
SBS Chr2 12734032 T-A Homo INTERGENIC
SBS Chr3 19410136 T-G Hetero INTERGENIC
SBS Chr3 19545476 A-C Hetero INTERGENIC
SBS Chr4 6210443 T-G Hetero INTERGENIC
SBS Chr4 10895706 T-C Hetero INTERGENIC
SBS Chr4 16564500 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 17252274 A-G Hetero INTRON
SBS Chr4 35109476 A-G Homo INTERGENIC
SBS Chr5 15023066 C-A Hetero INTERGENIC
SBS Chr5 18729463 A-T Homo INTERGENIC
SBS Chr5 24444656 C-A Hetero INTERGENIC
SBS Chr6 20198779 A-T Hetero INTERGENIC
SBS Chr6 23475598 C-T Homo INTERGENIC
SBS Chr7 2082259 A-G Hetero INTERGENIC
SBS Chr7 6960174 A-C Hetero INTERGENIC
SBS Chr7 7637834 T-C Hetero INTERGENIC
SBS Chr7 10534687 G-C Hetero INTERGENIC
SBS Chr7 19034020 A-C Hetero INTERGENIC
SBS Chr8 3357478 T-A Hetero INTRON
SBS Chr8 3465720 A-T Hetero INTRON
SBS Chr8 11992757 A-T Homo INTERGENIC
SBS Chr8 20101524 C-G Hetero INTERGENIC
SBS Chr9 3547478 G-A Hetero INTERGENIC
SBS Chr10 19421974 T-C Homo INTERGENIC
SBS Chr10 22978274 T-A Homo INTERGENIC
SBS Chr10 22978284 C-T Homo INTERGENIC
SBS Chr11 28004297 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g230100
SBS Chr12 7349224 A-G Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 3116871 3116872 1 OsKitaake09g016700
Deletion Chr1 5286872 5286874 2
Deletion Chr1 5288678 5288682 4
Deletion Chr4 8345709 8345776 67
Deletion Chr2 8481180 8481191 11
Deletion Chr4 12403719 12403723 4
Deletion Chr2 13703857 13703865 8
Deletion Chr2 14914869 14914879 10
Deletion Chr4 17045249 17045252 3
Deletion Chr7 17278181 17278182 1
Deletion Chr10 18764503 18764506 3
Deletion Chr10 20982664 20982668 4
Deletion Chr11 21419984 21419988 4
Deletion Chr12 27023519 27023840 321
Deletion Chr7 27631395 27631408 13 OsKitaake07g257700

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 9650240 9650243 2
Insertion Chr5 16440902 16440905 2
Insertion Chr8 6758453 6758456 2
Insertion Chr11 28164267 28164270 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 2777318 3117770
Inversion Chr9 2777333 3117773
Inversion Chr1 25490990 26361542 2
Inversion Chr1 25491003 26361556 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 26169487 Chr2 30363753 OsKitaake02g309300
Translocation Chr3 26169489 Chr2 30363744 OsKitaake02g309300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7441876	A-T	Hetero	INTERGENIC
SBS	Chr1	19459119	G-A	Hetero	INTERGENIC
SBS	Chr1	21980311	G-A	Hetero	INTERGENIC
SBS	Chr1	26445747	C-A	Hetero	INTERGENIC
SBS	Chr1	26543421	A-C	Hetero	UTR_5_PRIME
SBS	Chr1	26543422	T-C	Hetero	UTR_5_PRIME
SBS	Chr1	30431432	A-T	Hetero	INTERGENIC
SBS	Chr2	10872405	G-C	Homo	INTERGENIC
SBS	Chr2	12734032	T-A	Homo	INTERGENIC
SBS	Chr3	19410136	T-G	Hetero	INTERGENIC
SBS	Chr3	19545476	A-C	Hetero	INTERGENIC
SBS	Chr4	6210443	T-G	Hetero	INTERGENIC
SBS	Chr4	10895706	T-C	Hetero	INTERGENIC
SBS	Chr4	16564500	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	17252274	A-G	Hetero	INTRON
SBS	Chr4	35109476	A-G	Homo	INTERGENIC
SBS	Chr5	15023066	C-A	Hetero	INTERGENIC
SBS	Chr5	18729463	A-T	Homo	INTERGENIC
SBS	Chr5	24444656	C-A	Hetero	INTERGENIC
SBS	Chr6	20198779	A-T	Hetero	INTERGENIC
SBS	Chr6	23475598	C-T	Homo	INTERGENIC
SBS	Chr7	2082259	A-G	Hetero	INTERGENIC
SBS	Chr7	6960174	A-C	Hetero	INTERGENIC
SBS	Chr7	7637834	T-C	Hetero	INTERGENIC
SBS	Chr7	10534687	G-C	Hetero	INTERGENIC
SBS	Chr7	19034020	A-C	Hetero	INTERGENIC
SBS	Chr8	3357478	T-A	Hetero	INTRON
SBS	Chr8	3465720	A-T	Hetero	INTRON
SBS	Chr8	11992757	A-T	Homo	INTERGENIC
SBS	Chr8	20101524	C-G	Hetero	INTERGENIC
SBS	Chr9	3547478	G-A	Hetero	INTERGENIC
SBS	Chr10	19421974	T-C	Homo	INTERGENIC
SBS	Chr10	22978274	T-A	Homo	INTERGENIC
SBS	Chr10	22978284	C-T	Homo	INTERGENIC
SBS	Chr11	28004297	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g230100
SBS	Chr12	7349224	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	3116871	3116872	1	OsKitaake09g016700
Deletion	Chr1	5286872	5286874	2
Deletion	Chr1	5288678	5288682	4
Deletion	Chr4	8345709	8345776	67
Deletion	Chr2	8481180	8481191	11
Deletion	Chr4	12403719	12403723	4
Deletion	Chr2	13703857	13703865	8
Deletion	Chr2	14914869	14914879	10
Deletion	Chr4	17045249	17045252	3
Deletion	Chr7	17278181	17278182	1
Deletion	Chr10	18764503	18764506	3
Deletion	Chr10	20982664	20982668	4
Deletion	Chr11	21419984	21419988	4
Deletion	Chr12	27023519	27023840	321
Deletion	Chr7	27631395	27631408	13	OsKitaake07g257700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	2777318	3117770
Inversion	Chr9	2777333	3117773
Inversion	Chr1	25490990	26361542	2
Inversion	Chr1	25491003	26361556	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes