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| Mutant Information |
|---|
| Mutant Name | FN1156-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1156-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7988809 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g100100 |
| SBS | Chr1 | 32197796 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 32197797 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g325300 |
| SBS | Chr2 | 9025043 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9025044 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34073226 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 8908656 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 10922753 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 34494900 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 13804904 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 1996005 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 9976210 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 11521490 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19761985 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g161200 |
| SBS | Chr7 | 21826039 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 25065489 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 12179765 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16347148 | G-C | Homo | INTERGENIC | |
| SBS | Chr11 | 2550455 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 2550456 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15388307 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 20285012 | A-T | Homo | STOP_GAINED | OsKitaake12g157200 |
| SBS | Chr12 | 25500221 | C-A | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 3762940 | 3762944 | 4 | |
| Deletion | Chr12 | 8943001 | 8956000 | 12999 | |
| Deletion | Chr1 | 11569881 | 11570002 | 121 | |
| Deletion | Chr12 | 12344756 | 12344757 | 1 | |
| Deletion | Chr6 | 16992001 | 17001000 | 8999 | |
| Deletion | Chr12 | 20285027 | 20285032 | 5 | OsKitaake12g157200 |
| Deletion | Chr6 | 25779780 | 25779789 | 9 | |
| Deletion | Chr7 | 27444324 | 27444328 | 4 | |
| Deletion | Chr3 | 35184001 | 35202000 | 17999 |
Insertions: 6
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 11954478 | 11963479 | OsKitaake10g071200 |
| Inversion | Chr10 | 11954485 | 11963484 | OsKitaake10g071200 |
| Inversion | Chr7 | 13105513 | 13986501 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 6851959 | Chr2 | 29586832 | |
| Translocation | Chr12 | 6854199 | Chr2 | 29586833 | OsKitaake12g078000 |
| Translocation | Chr11 | 25162140 | Chr5 | 21752285 |