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Mutant Information

Mutant Name	FN1158-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1158-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23510018 G-A Hetero INTERGENIC
SBS Chr1 29658070 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g290800
SBS Chr1 42223629 G-C Homo INTERGENIC
SBS Chr2 4071969 C-T Homo INTRON
SBS Chr2 28033434 C-G Hetero INTERGENIC
SBS Chr2 31792187 T-C Homo INTERGENIC
SBS Chr3 22862811 C-A Homo INTRON
SBS Chr4 893068 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g006650
SBS Chr4 7940942 C-T Hetero INTERGENIC
SBS Chr4 10870185 C-A Hetero INTERGENIC
SBS Chr4 35323778 T-C Homo INTERGENIC
SBS Chr4 36878797 T-A Hetero INTRON
SBS Chr5 7963450 C-T Hetero INTRON
SBS Chr5 11270784 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g095300
SBS Chr5 11744991 C-T Hetero INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 20631434 G-T Hetero INTERGENIC
SBS Chr6 549011 C-T Homo INTERGENIC
SBS Chr6 19876584 G-A Hetero UTR_5_PRIME
SBS Chr7 229641 A-T Homo INTERGENIC
SBS Chr7 11548312 T-A Hetero INTERGENIC
SBS Chr7 15698797 G-A Hetero INTERGENIC
SBS Chr8 2623053 T-G Homo INTERGENIC
SBS Chr8 14771633 T-A Hetero INTERGENIC
SBS Chr8 17082438 C-T Hetero INTERGENIC
SBS Chr9 3986787 G-A Homo SYNONYMOUS_CODING
SBS Chr9 5613852 G-C Hetero INTERGENIC
SBS Chr9 9591703 G-A Hetero INTRON
SBS Chr9 18433478 T-A Hetero INTRON
SBS Chr10 18613746 C-G Hetero SPLICE_SITE_REGION
SBS Chr11 723288 C-T Hetero INTERGENIC
SBS Chr11 16500977 T-C Homo INTRON
SBS Chr12 10499198 T-C Homo INTERGENIC

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2199001 2217000 17999 OsKitaake05g024800
Deletion Chr9 2736177 2736178 1
Deletion Chr12 2738172 2738173 1
Deletion Chr5 3485526 3485528 2
Deletion Chr2 3874001 3901000 26999 OsKitaake02g055800
Deletion Chr6 5212851 5212852 1
Deletion Chr6 5878455 5878457 2
Deletion Chr1 7048001 7067000 18999 3
Deletion Chr7 7422331 7422333 2
Deletion Chr7 8301454 8301456 2
Deletion Chr3 9930001 9940000 9999 OsKitaake03g135900
Deletion Chr12 10909977 10909994 17 OsKitaake12g101200
Deletion Chr5 10984001 11193000 208999 8
Deletion Chr4 15232001 15244000 11999
Deletion Chr1 16872001 16888000 15999
Deletion Chr6 17029001 17048000 18999 OsKitaake06g159700
Deletion Chr11 17133349 17133350 1 OsKitaake11g133750
Deletion Chr6 17246109 17246119 10
Deletion Chr3 17748028 17748030 2
Deletion Chr2 19407891 19407900 9
Deletion Chr8 20391001 20404000 12999
Deletion Chr3 21342691 21342695 4
Deletion Chr1 22997731 22997737 6
Deletion Chr11 25082095 25082101 6
Deletion Chr7 26136001 26150000 13999 OsKitaake07g239600
Deletion Chr2 26659001 26872000 212999 17
Deletion Chr5 28971583 28971587 4
Deletion Chr11 29045293 29045295 2
Deletion Chr4 30941001 30949000 7999
Deletion Chr2 31763001 31773000 9999
Deletion Chr4 36030622 36030638 16

Insertions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20981909 20981914 4
Insertion Chr2 30602361 30602364 2
Insertion Chr6 1418763 1418766 2 OsKitaake06g016000
Insertion Chr6 6786146 6786149 2
Insertion Chr6 12620554 12620557 2
Insertion Chr7 8659994 8659997 2
Insertion Chr7 26345964 26345967 2
Insertion Chr8 3379517 3379520 2
Insertion Chr8 10644665 10644668 2
Insertion Chr9 906671 906674 2
Insertion Chr11 2511725 2511728 2
Insertion Chr11 26239827 26239830 2
Insertion Chr2 13854529 13854531 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 25321920 25326629 OsKitaake06g224700
Inversion Chr6 25321937 25334510 OsKitaake06g224700

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 9711310 Chr2 24740926
Translocation Chr3 9711355 Chr2 24737369
Translocation Chr5 11282009 Chr2 26745851
Translocation Chr5 11282038 Chr2 26722957

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23510018	G-A	Hetero	INTERGENIC
SBS	Chr1	29658070	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g290800
SBS	Chr1	42223629	G-C	Homo	INTERGENIC
SBS	Chr2	4071969	C-T	Homo	INTRON
SBS	Chr2	28033434	C-G	Hetero	INTERGENIC
SBS	Chr2	31792187	T-C	Homo	INTERGENIC
SBS	Chr3	22862811	C-A	Homo	INTRON
SBS	Chr4	893068	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g006650
SBS	Chr4	7940942	C-T	Hetero	INTERGENIC
SBS	Chr4	10870185	C-A	Hetero	INTERGENIC
SBS	Chr4	35323778	T-C	Homo	INTERGENIC
SBS	Chr4	36878797	T-A	Hetero	INTRON
SBS	Chr5	7963450	C-T	Hetero	INTRON
SBS	Chr5	11270784	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g095300
SBS	Chr5	11744991	C-T	Hetero	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	20631434	G-T	Hetero	INTERGENIC
SBS	Chr6	549011	C-T	Homo	INTERGENIC
SBS	Chr6	19876584	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	229641	A-T	Homo	INTERGENIC
SBS	Chr7	11548312	T-A	Hetero	INTERGENIC
SBS	Chr7	15698797	G-A	Hetero	INTERGENIC
SBS	Chr8	2623053	T-G	Homo	INTERGENIC
SBS	Chr8	14771633	T-A	Hetero	INTERGENIC
SBS	Chr8	17082438	C-T	Hetero	INTERGENIC
SBS	Chr9	3986787	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	5613852	G-C	Hetero	INTERGENIC
SBS	Chr9	9591703	G-A	Hetero	INTRON
SBS	Chr9	18433478	T-A	Hetero	INTRON
SBS	Chr10	18613746	C-G	Hetero	SPLICE_SITE_REGION
SBS	Chr11	723288	C-T	Hetero	INTERGENIC
SBS	Chr11	16500977	T-C	Homo	INTRON
SBS	Chr12	10499198	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2199001	2217000	17999	OsKitaake05g024800
Deletion	Chr9	2736177	2736178	1
Deletion	Chr12	2738172	2738173	1
Deletion	Chr5	3485526	3485528	2
Deletion	Chr2	3874001	3901000	26999	OsKitaake02g055800
Deletion	Chr6	5212851	5212852	1
Deletion	Chr6	5878455	5878457	2
Deletion	Chr1	7048001	7067000	18999	3
Deletion	Chr7	7422331	7422333	2
Deletion	Chr7	8301454	8301456	2
Deletion	Chr3	9930001	9940000	9999	OsKitaake03g135900
Deletion	Chr12	10909977	10909994	17	OsKitaake12g101200
Deletion	Chr5	10984001	11193000	208999	8
Deletion	Chr4	15232001	15244000	11999
Deletion	Chr1	16872001	16888000	15999
Deletion	Chr6	17029001	17048000	18999	OsKitaake06g159700
Deletion	Chr11	17133349	17133350	1	OsKitaake11g133750
Deletion	Chr6	17246109	17246119	10
Deletion	Chr3	17748028	17748030	2
Deletion	Chr2	19407891	19407900	9
Deletion	Chr8	20391001	20404000	12999
Deletion	Chr3	21342691	21342695	4
Deletion	Chr1	22997731	22997737	6
Deletion	Chr11	25082095	25082101	6
Deletion	Chr7	26136001	26150000	13999	OsKitaake07g239600
Deletion	Chr2	26659001	26872000	212999	17
Deletion	Chr5	28971583	28971587	4
Deletion	Chr11	29045293	29045295	2
Deletion	Chr4	30941001	30949000	7999
Deletion	Chr2	31763001	31773000	9999
Deletion	Chr4	36030622	36030638	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	25321920	25326629	OsKitaake06g224700
Inversion	Chr6	25321937	25334510	OsKitaake06g224700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes