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Mutant Information

Mutant Name	FN1162-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1162-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22395679 G-A Hetero INTERGENIC
SBS Chr1 34059580 G-A Hetero UTR_3_PRIME
SBS Chr2 11942030 A-G Hetero INTERGENIC
SBS Chr2 16393325 G-A Hetero INTRON
SBS Chr2 36397235 A-T Hetero INTRON
SBS Chr3 1219640 G-A Hetero INTERGENIC
SBS Chr3 10862448 G-T Homo INTERGENIC
SBS Chr3 36069890 G-A Homo INTRON
SBS Chr4 22021041 A-T Homo INTERGENIC
SBS Chr5 25565119 C-T Hetero UTR_5_PRIME
SBS Chr5 25827279 C-T Hetero INTRON
SBS Chr6 8973380 G-T Hetero INTRON
SBS Chr6 13315493 T-A Hetero INTERGENIC
SBS Chr6 13315494 G-A Hetero INTERGENIC
SBS Chr6 20709256 G-A Homo INTRON
SBS Chr7 10705465 C-T Hetero INTERGENIC
SBS Chr7 27414348 T-A Homo INTERGENIC
SBS Chr7 27414352 G-A Homo INTERGENIC
SBS Chr9 11806578 C-A Hetero INTRON
SBS Chr9 15817871 T-C Hetero INTERGENIC
SBS Chr9 21689209 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g190800
SBS Chr10 764488 A-T Hetero INTERGENIC
SBS Chr10 7062713 C-T Hetero INTERGENIC
SBS Chr10 7494177 G-T Hetero INTERGENIC
SBS Chr10 9555112 G-C Hetero INTRON
SBS Chr11 8246583 G-A Homo INTERGENIC
SBS Chr11 8576213 C-A Hetero INTERGENIC
SBS Chr11 21701007 T-C Hetero INTERGENIC
SBS Chr11 27774508 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g226700
SBS Chr11 27908155 C-T Hetero INTERGENIC
SBS Chr12 24903997 T-A Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1303228 1303236 8
Deletion Chr2 1996690 1996699 9
Deletion Chr2 4520861 4520862 1
Deletion Chr4 5429128 5429133 5
Deletion Chr7 6630001 6799000 168999 18
Deletion Chr2 8896072 8896081 9
Deletion Chr8 13100235 13100240 5
Deletion Chr2 13114566 13114569 3 OsKitaake02g146200
Deletion Chr10 13558114 13558115 1
Deletion Chr8 13617001 13631000 13999
Deletion Chr12 13998309 13998315 6
Deletion Chr5 15149474 15149476 2
Deletion Chr8 16482682 16482688 6
Deletion Chr3 17149870 17149872 2
Deletion Chr10 18058532 18058533 1 OsKitaake10g127300
Deletion Chr11 19383001 19467000 83999 5
Deletion Chr4 21379330 21379331 1
Deletion Chr1 27538331 27538343 12
Deletion Chr4 31833331 31833334 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 40864591 40864594 2
Insertion Chr3 37693215 37693218 2
Insertion Chr5 5594701 5594704 2
Insertion Chr2 35355367 35355370 2
Insertion Chr3 22492942 22492944 1

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10046820 Chr8 12395402
Translocation Chr11 11055022 Chr2 33328233 2
Translocation Chr11 11055030 Chr2 33329061 2
Translocation Chr10 13161056 Chr8 13883618
Translocation Chr11 15785079 Chr2 33340660
Translocation Chr11 15785082 Chr2 33329067 OsKitaake02g343500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22395679	G-A	Hetero	INTERGENIC
SBS	Chr1	34059580	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	11942030	A-G	Hetero	INTERGENIC
SBS	Chr2	16393325	G-A	Hetero	INTRON
SBS	Chr2	36397235	A-T	Hetero	INTRON
SBS	Chr3	1219640	G-A	Hetero	INTERGENIC
SBS	Chr3	10862448	G-T	Homo	INTERGENIC
SBS	Chr3	36069890	G-A	Homo	INTRON
SBS	Chr4	22021041	A-T	Homo	INTERGENIC
SBS	Chr5	25565119	C-T	Hetero	UTR_5_PRIME
SBS	Chr5	25827279	C-T	Hetero	INTRON
SBS	Chr6	8973380	G-T	Hetero	INTRON
SBS	Chr6	13315493	T-A	Hetero	INTERGENIC
SBS	Chr6	13315494	G-A	Hetero	INTERGENIC
SBS	Chr6	20709256	G-A	Homo	INTRON
SBS	Chr7	10705465	C-T	Hetero	INTERGENIC
SBS	Chr7	27414348	T-A	Homo	INTERGENIC
SBS	Chr7	27414352	G-A	Homo	INTERGENIC
SBS	Chr9	11806578	C-A	Hetero	INTRON
SBS	Chr9	15817871	T-C	Hetero	INTERGENIC
SBS	Chr9	21689209	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g190800
SBS	Chr10	764488	A-T	Hetero	INTERGENIC
SBS	Chr10	7062713	C-T	Hetero	INTERGENIC
SBS	Chr10	7494177	G-T	Hetero	INTERGENIC
SBS	Chr10	9555112	G-C	Hetero	INTRON
SBS	Chr11	8246583	G-A	Homo	INTERGENIC
SBS	Chr11	8576213	C-A	Hetero	INTERGENIC
SBS	Chr11	21701007	T-C	Hetero	INTERGENIC
SBS	Chr11	27774508	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g226700
SBS	Chr11	27908155	C-T	Hetero	INTERGENIC
SBS	Chr12	24903997	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1303228	1303236	8
Deletion	Chr2	1996690	1996699	9
Deletion	Chr2	4520861	4520862	1
Deletion	Chr4	5429128	5429133	5
Deletion	Chr7	6630001	6799000	168999	18
Deletion	Chr2	8896072	8896081	9
Deletion	Chr8	13100235	13100240	5
Deletion	Chr2	13114566	13114569	3	OsKitaake02g146200
Deletion	Chr10	13558114	13558115	1
Deletion	Chr8	13617001	13631000	13999
Deletion	Chr12	13998309	13998315	6
Deletion	Chr5	15149474	15149476	2
Deletion	Chr8	16482682	16482688	6
Deletion	Chr3	17149870	17149872	2
Deletion	Chr10	18058532	18058533	1	OsKitaake10g127300
Deletion	Chr11	19383001	19467000	83999	5
Deletion	Chr4	21379330	21379331	1
Deletion	Chr1	27538331	27538343	12
Deletion	Chr4	31833331	31833334	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10046820	Chr8	12395402
Translocation	Chr11	11055022	Chr2	33328233	2
Translocation	Chr11	11055030	Chr2	33329061	2
Translocation	Chr10	13161056	Chr8	13883618
Translocation	Chr11	15785079	Chr2	33340660
Translocation	Chr11	15785082	Chr2	33329067	OsKitaake02g343500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes