Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1163-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1163-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1261152 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 12051120 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 32667141 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 988581 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g014200 |
| SBS | Chr2 | 5194525 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7963464 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 8389737 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 30241428 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19858615 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 508731 | C-T | Hetero | STOP_GAINED | OsKitaake04g003800 |
| SBS | Chr4 | 3505842 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 6635577 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27608714 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 18800888 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 23502945 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 17274955 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 26419841 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g237300 |
| SBS | Chr7 | 9594904 | A-C | Homo | INTERGENIC | |
| SBS | Chr7 | 14992986 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 21814369 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 22702293 | A-G | Homo | UTR_5_PRIME | |
| SBS | Chr8 | 8991551 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 11674072 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 14647234 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 23092608 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 24292012 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6842953 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 12194338 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 22180309 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 22365974 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 5719494 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10001719 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 11808570 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 25344172 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 26749183 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 4899324 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11057727 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 14561635 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24896850 | G-A | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1106761 | 1106762 | 1 | |
| Deletion | Chr7 | 2412359 | 2412372 | 13 | |
| Deletion | Chr6 | 4289028 | 4289038 | 10 | |
| Deletion | Chr5 | 12424107 | 12424108 | 1 | |
| Deletion | Chr9 | 15818001 | 15818003 | 2 | |
| Deletion | Chr4 | 17722892 | 17722893 | 1 | |
| Deletion | Chr2 | 19519001 | 19546000 | 26999 | OsKitaake02g191000 |
| Deletion | Chr12 | 19600589 | 19600591 | 2 | |
| Deletion | Chr4 | 30647653 | 30647656 | 3 | |
| Deletion | Chr2 | 30939684 | 30939689 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 3290738 | 3290743 | 4 | |
| Insertion | Chr7 | 8575085 | 8575088 | 2 | |
| Insertion | Chr4 | 8898522 | 8898524 | 1 | |
| Insertion | Chr5 | 15513322 | 15513324 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 18758644 | 19496900 | |
| Inversion | Chr2 | 18758652 | 19543839 | |
| Inversion | Chr7 | 21398955 | 21657681 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 5648763 | Chr2 | 19496904 | |
| Translocation | Chr4 | 5648788 | Chr2 | 19519904 | |
| Translocation | Chr9 | 8050931 | Chr4 | 34185084 |