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Mutant Information

Mutant Name	FN1170-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1170-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3994610 T-A Homo INTERGENIC
SBS Chr1 10713285 T-A Hetero INTERGENIC
SBS Chr1 32841747 A-G Hetero UTR_3_PRIME
SBS Chr2 14248790 G-C Hetero INTERGENIC
SBS Chr2 19202288 T-C Hetero INTERGENIC
SBS Chr2 24035635 T-C Hetero INTERGENIC
SBS Chr2 28393663 C-T Hetero INTERGENIC
SBS Chr3 19229448 G-T Hetero INTERGENIC
SBS Chr3 23558760 C-T Homo INTERGENIC
SBS Chr3 26848337 T-C Homo INTERGENIC
SBS Chr3 28810021 C-T Homo UTR_3_PRIME
SBS Chr3 29116830 G-A Homo INTERGENIC
SBS Chr4 10687245 T-C Homo INTERGENIC
SBS Chr4 18989755 G-A Homo INTERGENIC
SBS Chr4 18989757 G-A Homo INTERGENIC
SBS Chr5 2794569 G-A Hetero INTRON
SBS Chr5 10258765 C-T Homo INTERGENIC
SBS Chr5 17579076 G-A Hetero UTR_3_PRIME
SBS Chr6 4369565 G-T Hetero STOP_GAINED OsKitaake06g060100
SBS Chr6 8867888 T-C Hetero INTERGENIC
SBS Chr6 9857959 C-A Hetero INTERGENIC
SBS Chr6 23376086 T-A Homo INTERGENIC
SBS Chr7 13241969 G-A Homo INTERGENIC
SBS Chr7 17893099 C-A Hetero INTERGENIC
SBS Chr8 21731490 G-A Hetero INTERGENIC
SBS Chr9 9867663 T-G Hetero INTERGENIC
SBS Chr10 10747411 G-A Hetero INTERGENIC
SBS Chr10 22616359 G-A Hetero INTERGENIC
SBS Chr12 11984176 G-A Hetero INTRON
SBS Chr12 16010828 G-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 661831 661835 4 OsKitaake02g009700
Deletion Chr3 4822668 4822673 5
Deletion Chr1 5402975 5402976 1
Deletion Chr10 7778055 7778064 9
Deletion Chr8 8353839 8353841 2
Deletion Chr4 9148022 9148029 7
Deletion Chr4 9480408 9480580 172
Deletion Chr7 10982070 10982083 13
Deletion Chr3 13166358 13166359 1
Deletion Chr8 13490546 13490548 2
Deletion Chr7 14372006 14372007 1
Deletion Chr12 14752445 14752456 11
Deletion Chr3 20218097 20218101 4
Deletion Chr12 22879617 22879622 5
Deletion Chr3 26863964 26863991 27
Deletion Chr3 29199036 29199046 10
Deletion Chr3 35339037 35339038 1 OsKitaake03g387600
Deletion Chr1 38381204 38381208 4
Deletion Chr1 38916664 38916674 10

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5241306 5241309 2
Insertion Chr4 21825659 21825661 1 OsKitaake04g125301
Insertion Chr5 176980 176987 6
Insertion Chr5 20976434 20976437 2
Insertion Chr9 21086414 21086417 2
Insertion Chr5 12464015 12464017 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3994610	T-A	Homo	INTERGENIC
SBS	Chr1	10713285	T-A	Hetero	INTERGENIC
SBS	Chr1	32841747	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	14248790	G-C	Hetero	INTERGENIC
SBS	Chr2	19202288	T-C	Hetero	INTERGENIC
SBS	Chr2	24035635	T-C	Hetero	INTERGENIC
SBS	Chr2	28393663	C-T	Hetero	INTERGENIC
SBS	Chr3	19229448	G-T	Hetero	INTERGENIC
SBS	Chr3	23558760	C-T	Homo	INTERGENIC
SBS	Chr3	26848337	T-C	Homo	INTERGENIC
SBS	Chr3	28810021	C-T	Homo	UTR_3_PRIME
SBS	Chr3	29116830	G-A	Homo	INTERGENIC
SBS	Chr4	10687245	T-C	Homo	INTERGENIC
SBS	Chr4	18989755	G-A	Homo	INTERGENIC
SBS	Chr4	18989757	G-A	Homo	INTERGENIC
SBS	Chr5	2794569	G-A	Hetero	INTRON
SBS	Chr5	10258765	C-T	Homo	INTERGENIC
SBS	Chr5	17579076	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	4369565	G-T	Hetero	STOP_GAINED	OsKitaake06g060100
SBS	Chr6	8867888	T-C	Hetero	INTERGENIC
SBS	Chr6	9857959	C-A	Hetero	INTERGENIC
SBS	Chr6	23376086	T-A	Homo	INTERGENIC
SBS	Chr7	13241969	G-A	Homo	INTERGENIC
SBS	Chr7	17893099	C-A	Hetero	INTERGENIC
SBS	Chr8	21731490	G-A	Hetero	INTERGENIC
SBS	Chr9	9867663	T-G	Hetero	INTERGENIC
SBS	Chr10	10747411	G-A	Hetero	INTERGENIC
SBS	Chr10	22616359	G-A	Hetero	INTERGENIC
SBS	Chr12	11984176	G-A	Hetero	INTRON
SBS	Chr12	16010828	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	661831	661835	4	OsKitaake02g009700
Deletion	Chr3	4822668	4822673	5
Deletion	Chr1	5402975	5402976	1
Deletion	Chr10	7778055	7778064	9
Deletion	Chr8	8353839	8353841	2
Deletion	Chr4	9148022	9148029	7
Deletion	Chr4	9480408	9480580	172
Deletion	Chr7	10982070	10982083	13
Deletion	Chr3	13166358	13166359	1
Deletion	Chr8	13490546	13490548	2
Deletion	Chr7	14372006	14372007	1
Deletion	Chr12	14752445	14752456	11
Deletion	Chr3	20218097	20218101	4
Deletion	Chr12	22879617	22879622	5
Deletion	Chr3	26863964	26863991	27
Deletion	Chr3	29199036	29199046	10
Deletion	Chr3	35339037	35339038	1	OsKitaake03g387600
Deletion	Chr1	38381204	38381208	4
Deletion	Chr1	38916664	38916674	10

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes