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Mutant Information

Mutant Name	FN1173-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1173-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8734143 G-A Hetero INTERGENIC
SBS Chr1 11548427 G-C Hetero INTERGENIC
SBS Chr1 11549354 A-G Hetero INTERGENIC
SBS Chr1 14240298 G-A Hetero INTERGENIC
SBS Chr1 17650810 C-T Hetero INTERGENIC
SBS Chr1 22687255 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g217000
SBS Chr1 38811657 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 5099691 G-A Homo INTERGENIC
SBS Chr3 22201944 C-A Hetero INTERGENIC
SBS Chr3 27594456 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 23378820 A-T Homo INTERGENIC
SBS Chr4 24167593 G-A Hetero INTERGENIC
SBS Chr5 7080628 G-A Homo INTERGENIC
SBS Chr5 16314729 G-A Hetero INTERGENIC
SBS Chr5 16314730 C-A Hetero INTERGENIC
SBS Chr5 26887049 C-T Hetero INTERGENIC
SBS Chr6 24854553 G-T Hetero INTERGENIC
SBS Chr6 24854554 G-T Hetero INTERGENIC
SBS Chr6 24968399 C-T Homo INTERGENIC
SBS Chr7 9748821 T-G Hetero INTERGENIC
SBS Chr7 21087000 G-A Hetero INTERGENIC
SBS Chr8 1965898 C-T Hetero INTERGENIC
SBS Chr9 9677118 T-A Hetero INTERGENIC
SBS Chr10 4934216 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g036000
SBS Chr10 7065696 G-T Hetero INTERGENIC
SBS Chr10 8460229 C-T Hetero INTERGENIC
SBS Chr10 9100375 C-T Hetero INTERGENIC
SBS Chr11 1236842 A-G Homo INTRON
SBS Chr11 1829357 T-A Hetero INTRON
SBS Chr11 5724304 A-T Homo INTRON
SBS Chr11 13117098 A-C Hetero INTERGENIC
SBS Chr11 13132387 A-G Hetero INTERGENIC
SBS Chr12 2793468 A-T Hetero INTERGENIC
SBS Chr12 3425366 C-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1001 10000 8999
Deletion Chr10 163145 163147 2
Deletion Chr6 2635519 2635534 15
Deletion Chr4 12073681 12073686 5
Deletion Chr3 12791243 12791244 1
Deletion Chr6 12934587 12934595 8
Deletion Chr9 19350588 19350596 8
Deletion Chr8 22176416 22176419 3
Deletion Chr5 23170007 23170015 8
Deletion Chr11 23173815 23173817 2
Deletion Chr2 33576194 33576203 9

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 20463812 20463815 2
Insertion Chr10 20615632 20615634 1
Insertion Chr10 23399614 23399617 2
Insertion Chr2 13778278 13778280 1
Insertion Chr12 16125353 16125355 1

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 17524162 Chr5 23058418
Translocation Chr6 17525247 Chr5 23058417
Translocation Chr3 30861002 Chr1 38227520 OsKitaake03g323900
Translocation Chr3 30861293 Chr1 42299515 OsKitaake01g466300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8734143	G-A	Hetero	INTERGENIC
SBS	Chr1	11548427	G-C	Hetero	INTERGENIC
SBS	Chr1	11549354	A-G	Hetero	INTERGENIC
SBS	Chr1	14240298	G-A	Hetero	INTERGENIC
SBS	Chr1	17650810	C-T	Hetero	INTERGENIC
SBS	Chr1	22687255	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g217000
SBS	Chr1	38811657	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	5099691	G-A	Homo	INTERGENIC
SBS	Chr3	22201944	C-A	Hetero	INTERGENIC
SBS	Chr3	27594456	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	23378820	A-T	Homo	INTERGENIC
SBS	Chr4	24167593	G-A	Hetero	INTERGENIC
SBS	Chr5	7080628	G-A	Homo	INTERGENIC
SBS	Chr5	16314729	G-A	Hetero	INTERGENIC
SBS	Chr5	16314730	C-A	Hetero	INTERGENIC
SBS	Chr5	26887049	C-T	Hetero	INTERGENIC
SBS	Chr6	24854553	G-T	Hetero	INTERGENIC
SBS	Chr6	24854554	G-T	Hetero	INTERGENIC
SBS	Chr6	24968399	C-T	Homo	INTERGENIC
SBS	Chr7	9748821	T-G	Hetero	INTERGENIC
SBS	Chr7	21087000	G-A	Hetero	INTERGENIC
SBS	Chr8	1965898	C-T	Hetero	INTERGENIC
SBS	Chr9	9677118	T-A	Hetero	INTERGENIC
SBS	Chr10	4934216	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g036000
SBS	Chr10	7065696	G-T	Hetero	INTERGENIC
SBS	Chr10	8460229	C-T	Hetero	INTERGENIC
SBS	Chr10	9100375	C-T	Hetero	INTERGENIC
SBS	Chr11	1236842	A-G	Homo	INTRON
SBS	Chr11	1829357	T-A	Hetero	INTRON
SBS	Chr11	5724304	A-T	Homo	INTRON
SBS	Chr11	13117098	A-C	Hetero	INTERGENIC
SBS	Chr11	13132387	A-G	Hetero	INTERGENIC
SBS	Chr12	2793468	A-T	Hetero	INTERGENIC
SBS	Chr12	3425366	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1001	10000	8999
Deletion	Chr10	163145	163147	2
Deletion	Chr6	2635519	2635534	15
Deletion	Chr4	12073681	12073686	5
Deletion	Chr3	12791243	12791244	1
Deletion	Chr6	12934587	12934595	8
Deletion	Chr9	19350588	19350596	8
Deletion	Chr8	22176416	22176419	3
Deletion	Chr5	23170007	23170015	8
Deletion	Chr11	23173815	23173817	2
Deletion	Chr2	33576194	33576203	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	17524162	Chr5	23058418
Translocation	Chr6	17525247	Chr5	23058417
Translocation	Chr3	30861002	Chr1	38227520	OsKitaake03g323900
Translocation	Chr3	30861293	Chr1	42299515	OsKitaake01g466300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes