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Mutant Information

Mutant Name	FN1175-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1175-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5775591 G-C Homo INTERGENIC
SBS Chr1 25410849 T-A Homo INTRON
SBS Chr1 29008287 G-A Hetero INTERGENIC
SBS Chr2 890161 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g012500
SBS Chr2 10564250 G-A Hetero INTERGENIC
SBS Chr2 21904778 A-G Homo INTERGENIC
SBS Chr3 35693058 G-A Hetero INTERGENIC
SBS Chr4 7096417 G-C Homo INTERGENIC
SBS Chr4 32839395 T-C Hetero INTERGENIC
SBS Chr4 34011902 G-A Hetero INTERGENIC
SBS Chr4 35827086 G-A Hetero UTR_3_PRIME
SBS Chr5 6351149 C-T Homo INTERGENIC
SBS Chr5 6351150 A-T Homo INTERGENIC
SBS Chr5 11532336 A-T Hetero INTERGENIC
SBS Chr6 12722165 A-T Hetero INTERGENIC
SBS Chr6 16909004 G-A Hetero INTRON
SBS Chr6 17113791 A-T Hetero INTRON
SBS Chr6 20804367 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g185800
SBS Chr6 21549272 T-G Hetero INTERGENIC
SBS Chr6 29605981 G-A Homo INTERGENIC
SBS Chr7 2766638 C-T Hetero INTERGENIC
SBS Chr7 8993578 A-T Homo INTERGENIC
SBS Chr8 7294657 G-A Hetero INTERGENIC
SBS Chr8 20056510 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g147700
SBS Chr8 24683887 A-G Hetero INTERGENIC
SBS Chr9 2899005 G-A Homo INTERGENIC
SBS Chr9 8347789 G-T Homo INTERGENIC
SBS Chr9 11887862 T-A Hetero INTERGENIC
SBS Chr9 13401662 C-T Hetero INTERGENIC
SBS Chr9 13484492 C-G Hetero INTERGENIC
SBS Chr10 5548359 C-T Hetero INTERGENIC
SBS Chr10 15964547 A-T Hetero INTERGENIC
SBS Chr10 17371895 C-A Hetero INTERGENIC
SBS Chr11 8919593 A-T Hetero INTERGENIC
SBS Chr11 15208470 C-A Hetero INTERGENIC
SBS Chr11 15340465 G-C Hetero INTERGENIC
SBS Chr11 16964993 C-T Hetero INTERGENIC
SBS Chr12 10626223 C-T Hetero INTERGENIC
SBS Chr12 13352596 C-T Hetero INTERGENIC
SBS Chr12 20255586 T-C Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3659426 3659428 2
Deletion Chr4 3972144 3972154 10
Deletion Chr1 5086491 5086496 5
Deletion Chr5 9266057 9266061 4
Deletion Chr12 19582289 19582291 2
Deletion Chr10 21967505 21967507 2
Deletion Chr3 23135903 23135912 9
Deletion Chr4 26418584 26418589 5
Deletion Chr7 26424919 26424921 2
Deletion Chr8 26998898 26998899 1
Deletion Chr11 27004305 27004309 4
Deletion Chr8 28476538 28476541 3
Deletion Chr1 35997217 35997218 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1623972 1623975 2
Insertion Chr1 43972541 43972544 2
Insertion Chr2 18837125 18837127 1
Insertion Chr3 23180574 23180577 2
Insertion Chr7 11362700 11362703 2
Insertion Chr3 20050183 20050185 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5775591	G-C	Homo	INTERGENIC
SBS	Chr1	25410849	T-A	Homo	INTRON
SBS	Chr1	29008287	G-A	Hetero	INTERGENIC
SBS	Chr2	890161	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g012500
SBS	Chr2	10564250	G-A	Hetero	INTERGENIC
SBS	Chr2	21904778	A-G	Homo	INTERGENIC
SBS	Chr3	35693058	G-A	Hetero	INTERGENIC
SBS	Chr4	7096417	G-C	Homo	INTERGENIC
SBS	Chr4	32839395	T-C	Hetero	INTERGENIC
SBS	Chr4	34011902	G-A	Hetero	INTERGENIC
SBS	Chr4	35827086	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	6351149	C-T	Homo	INTERGENIC
SBS	Chr5	6351150	A-T	Homo	INTERGENIC
SBS	Chr5	11532336	A-T	Hetero	INTERGENIC
SBS	Chr6	12722165	A-T	Hetero	INTERGENIC
SBS	Chr6	16909004	G-A	Hetero	INTRON
SBS	Chr6	17113791	A-T	Hetero	INTRON
SBS	Chr6	20804367	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g185800
SBS	Chr6	21549272	T-G	Hetero	INTERGENIC
SBS	Chr6	29605981	G-A	Homo	INTERGENIC
SBS	Chr7	2766638	C-T	Hetero	INTERGENIC
SBS	Chr7	8993578	A-T	Homo	INTERGENIC
SBS	Chr8	7294657	G-A	Hetero	INTERGENIC
SBS	Chr8	20056510	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g147700
SBS	Chr8	24683887	A-G	Hetero	INTERGENIC
SBS	Chr9	2899005	G-A	Homo	INTERGENIC
SBS	Chr9	8347789	G-T	Homo	INTERGENIC
SBS	Chr9	11887862	T-A	Hetero	INTERGENIC
SBS	Chr9	13401662	C-T	Hetero	INTERGENIC
SBS	Chr9	13484492	C-G	Hetero	INTERGENIC
SBS	Chr10	5548359	C-T	Hetero	INTERGENIC
SBS	Chr10	15964547	A-T	Hetero	INTERGENIC
SBS	Chr10	17371895	C-A	Hetero	INTERGENIC
SBS	Chr11	8919593	A-T	Hetero	INTERGENIC
SBS	Chr11	15208470	C-A	Hetero	INTERGENIC
SBS	Chr11	15340465	G-C	Hetero	INTERGENIC
SBS	Chr11	16964993	C-T	Hetero	INTERGENIC
SBS	Chr12	10626223	C-T	Hetero	INTERGENIC
SBS	Chr12	13352596	C-T	Hetero	INTERGENIC
SBS	Chr12	20255586	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3659426	3659428	2
Deletion	Chr4	3972144	3972154	10
Deletion	Chr1	5086491	5086496	5
Deletion	Chr5	9266057	9266061	4
Deletion	Chr12	19582289	19582291	2
Deletion	Chr10	21967505	21967507	2
Deletion	Chr3	23135903	23135912	9
Deletion	Chr4	26418584	26418589	5
Deletion	Chr7	26424919	26424921	2
Deletion	Chr8	26998898	26998899	1
Deletion	Chr11	27004305	27004309	4
Deletion	Chr8	28476538	28476541	3
Deletion	Chr1	35997217	35997218	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes