Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1176-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1176-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 45
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 23709059 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 23709708 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g227500 |
| SBS | Chr1 | 42093406 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 43196529 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 7114196 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g095500 |
| SBS | Chr2 | 27782144 | T-C | Homo | INTRON | |
| SBS | Chr2 | 30333878 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 2422264 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4658570 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 8343442 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9838400 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 33387168 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g356700 |
| SBS | Chr4 | 4541081 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 6288400 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23835873 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 1996244 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 9344714 | C-A | Hetero | INTRON | |
| SBS | Chr5 | 18844285 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 23959272 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr5 | 23959273 | G-T | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 8556383 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 8556385 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 9016102 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 9324777 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 11290366 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 17553976 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 26355994 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 28067966 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 486309 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 6810731 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10090503 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 10753252 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 28341744 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 4346653 | A-C | Homo | INTERGENIC | |
| SBS | Chr8 | 16830629 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 21971733 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 6271824 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 6567491 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 11102016 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 20672103 | A-C | Hetero | INTRON | |
| SBS | Chr11 | 4880918 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 9395120 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 14248543 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 19697664 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 13957510 | A-T | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 854970 | 854983 | 13 | |
| Deletion | Chr12 | 4977102 | 4977103 | 1 | OsKitaake12g063800 |
| Deletion | Chr7 | 7922939 | 7922940 | 1 | |
| Deletion | Chr3 | 9837310 | 9837311 | 1 | OsKitaake03g134200 |
| Deletion | Chr3 | 17595885 | 17595889 | 4 | |
| Deletion | Chr7 | 23345173 | 23345194 | 21 | |
| Deletion | Chr3 | 28767868 | 28767870 | 2 | |
| Deletion | Chr3 | 30912651 | 30912657 | 6 | |
| Deletion | Chr2 | 36578084 | 36578086 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 23382250 | 23382252 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 6725323 | 7059375 | OsKitaake04g036000 |
| Inversion | Chr4 | 6725334 | 7060950 | |
| Inversion | Chr4 | 7036389 | 7474473 |