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Mutant Information

Mutant Name	FN1179-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1179-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10926357 C-A Hetero INTERGENIC
SBS Chr1 11621315 G-A Hetero INTERGENIC
SBS Chr1 39331898 C-T Homo INTERGENIC
SBS Chr2 10336797 T-C Hetero INTRON
SBS Chr2 10336798 A-T Hetero INTRON
SBS Chr2 10903314 C-T Hetero INTERGENIC
SBS Chr2 26202279 G-A Hetero INTRON
SBS Chr3 4717226 G-T Hetero INTERGENIC
SBS Chr3 9488640 A-T Hetero INTERGENIC
SBS Chr3 10380815 A-G Hetero INTRON
SBS Chr3 11794677 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g160200
SBS Chr3 15459186 G-A Hetero INTERGENIC
SBS Chr3 15934322 A-C Hetero INTERGENIC
SBS Chr3 36134797 T-C Homo INTERGENIC
SBS Chr4 46704 C-T Hetero INTERGENIC
SBS Chr4 7518048 T-C Hetero INTERGENIC
SBS Chr4 35604134 G-T Hetero INTERGENIC
SBS Chr4 36473699 A-T Hetero INTERGENIC
SBS Chr4 36781888 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g320700
SBS Chr5 8520670 C-A Hetero INTERGENIC
SBS Chr5 8520671 T-A Hetero INTERGENIC
SBS Chr5 10420270 C-A Hetero INTERGENIC
SBS Chr5 12419920 C-A Hetero INTERGENIC
SBS Chr6 12233404 T-A Homo INTERGENIC
SBS Chr7 5780989 G-C Homo INTERGENIC
SBS Chr7 28873512 A-T Hetero UTR_3_PRIME
SBS Chr8 10443664 A-G Hetero INTRON
SBS Chr8 11633856 C-T Hetero INTERGENIC
SBS Chr8 12632621 A-G Hetero INTRON
SBS Chr8 14022278 G-C Hetero INTERGENIC
SBS Chr8 17412311 A-T Hetero INTERGENIC
SBS Chr8 24545036 T-C Homo INTERGENIC
SBS Chr9 1911955 C-A Hetero INTERGENIC
SBS Chr9 3108736 G-A Hetero INTERGENIC
SBS Chr9 4964593 T-G Hetero INTERGENIC
SBS Chr10 8680978 T-C Hetero INTERGENIC
SBS Chr10 23962204 G-A Hetero UTR_3_PRIME

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 11283 11284 1
Deletion Chr7 6373321 6373331 10
Deletion Chr10 8706655 8706656 1
Deletion Chr3 9828540 9828544 4 OsKitaake03g134000
Deletion Chr3 10512991 10512992 1
Deletion Chr9 11823244 11823245 1
Deletion Chr9 16912451 16912520 69
Deletion Chr2 20550466 20550788 322
Deletion Chr9 21784001 22206000 421999 82
Deletion Chr12 23261968 23261969 1 OsKitaake12g186000
Deletion Chr4 27383387 27383388 1
Deletion Chr6 30428173 30428174 1 OsKitaake06g286000
Deletion Chr2 32814706 32814722 16

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1380233 1380236 2
Insertion Chr2 20284169 20284172 2
Insertion Chr7 18398048 18398051 2
Insertion Chr10 11947046 11947050 3
Insertion Chr11 1842027 1842030 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10926357	C-A	Hetero	INTERGENIC
SBS	Chr1	11621315	G-A	Hetero	INTERGENIC
SBS	Chr1	39331898	C-T	Homo	INTERGENIC
SBS	Chr2	10336797	T-C	Hetero	INTRON
SBS	Chr2	10336798	A-T	Hetero	INTRON
SBS	Chr2	10903314	C-T	Hetero	INTERGENIC
SBS	Chr2	26202279	G-A	Hetero	INTRON
SBS	Chr3	4717226	G-T	Hetero	INTERGENIC
SBS	Chr3	9488640	A-T	Hetero	INTERGENIC
SBS	Chr3	10380815	A-G	Hetero	INTRON
SBS	Chr3	11794677	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g160200
SBS	Chr3	15459186	G-A	Hetero	INTERGENIC
SBS	Chr3	15934322	A-C	Hetero	INTERGENIC
SBS	Chr3	36134797	T-C	Homo	INTERGENIC
SBS	Chr4	46704	C-T	Hetero	INTERGENIC
SBS	Chr4	7518048	T-C	Hetero	INTERGENIC
SBS	Chr4	35604134	G-T	Hetero	INTERGENIC
SBS	Chr4	36473699	A-T	Hetero	INTERGENIC
SBS	Chr4	36781888	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g320700
SBS	Chr5	8520670	C-A	Hetero	INTERGENIC
SBS	Chr5	8520671	T-A	Hetero	INTERGENIC
SBS	Chr5	10420270	C-A	Hetero	INTERGENIC
SBS	Chr5	12419920	C-A	Hetero	INTERGENIC
SBS	Chr6	12233404	T-A	Homo	INTERGENIC
SBS	Chr7	5780989	G-C	Homo	INTERGENIC
SBS	Chr7	28873512	A-T	Hetero	UTR_3_PRIME
SBS	Chr8	10443664	A-G	Hetero	INTRON
SBS	Chr8	11633856	C-T	Hetero	INTERGENIC
SBS	Chr8	12632621	A-G	Hetero	INTRON
SBS	Chr8	14022278	G-C	Hetero	INTERGENIC
SBS	Chr8	17412311	A-T	Hetero	INTERGENIC
SBS	Chr8	24545036	T-C	Homo	INTERGENIC
SBS	Chr9	1911955	C-A	Hetero	INTERGENIC
SBS	Chr9	3108736	G-A	Hetero	INTERGENIC
SBS	Chr9	4964593	T-G	Hetero	INTERGENIC
SBS	Chr10	8680978	T-C	Hetero	INTERGENIC
SBS	Chr10	23962204	G-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	11283	11284	1
Deletion	Chr7	6373321	6373331	10
Deletion	Chr10	8706655	8706656	1
Deletion	Chr3	9828540	9828544	4	OsKitaake03g134000
Deletion	Chr3	10512991	10512992	1
Deletion	Chr9	11823244	11823245	1
Deletion	Chr9	16912451	16912520	69
Deletion	Chr2	20550466	20550788	322
Deletion	Chr9	21784001	22206000	421999	82
Deletion	Chr12	23261968	23261969	1	OsKitaake12g186000
Deletion	Chr4	27383387	27383388	1
Deletion	Chr6	30428173	30428174	1	OsKitaake06g286000
Deletion	Chr2	32814706	32814722	16

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes