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Mutant Information

Mutant Name	FN1180-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1180-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4591363 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g061600
SBS Chr1 8009177 T-C Hetero INTERGENIC
SBS Chr1 14344774 T-A Homo INTRON
SBS Chr1 14344775 G-T Homo INTRON
SBS Chr1 32592137 G-T Homo INTERGENIC
SBS Chr2 8842422 C-A Homo INTERGENIC
SBS Chr2 23066314 A-G Hetero UTR_3_PRIME
SBS Chr2 24554148 G-T Hetero INTRON
SBS Chr3 4768530 C-T Homo INTERGENIC
SBS Chr3 12294643 G-T Hetero INTERGENIC
SBS Chr3 19808476 A-T Hetero INTERGENIC
SBS Chr3 37588777 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g422100
SBS Chr5 131274 C-T Homo INTERGENIC
SBS Chr5 11291117 G-T Homo INTERGENIC
SBS Chr6 1328439 A-G Hetero INTERGENIC
SBS Chr6 29346248 G-C Homo INTERGENIC
SBS Chr7 23971990 C-G Hetero UTR_5_PRIME
SBS Chr8 19124127 C-A Homo INTERGENIC
SBS Chr8 21022606 T-C Homo INTERGENIC
SBS Chr9 3552978 A-G Hetero INTERGENIC
SBS Chr9 14336729 C-T Hetero INTERGENIC
SBS Chr10 613683 A-G Hetero INTERGENIC
SBS Chr10 4655391 G-T Hetero INTERGENIC
SBS Chr10 14783762 G-A Hetero INTERGENIC
SBS Chr10 15365478 C-T Hetero INTERGENIC
SBS Chr10 15365481 A-T Hetero INTERGENIC
SBS Chr10 15365482 G-T Hetero INTERGENIC
SBS Chr10 19004802 G-T Hetero INTERGENIC
SBS Chr11 24835090 A-T Hetero INTERGENIC
SBS Chr11 28980638 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g237200
SBS Chr12 10926781 C-T Hetero INTERGENIC
SBS Chr12 17224353 T-C Hetero INTERGENIC
SBS Chr12 18315360 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 22286858 C-T Homo INTERGENIC
SBS Chr12 22286859 A-T Homo INTERGENIC
SBS Chr12 27071270 G-T Homo SYNONYMOUS_CODING

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 588444 588468 24 OsKitaake07g006500
Deletion Chr12 3137600 3137606 6
Deletion Chr9 3235387 3235399 12
Deletion Chr12 3824133 3824135 2
Deletion Chr2 7356818 7356822 4
Deletion Chr10 12407893 12407894 1
Deletion Chr10 13527789 13527797 8
Deletion Chr11 13914383 13914385 2
Deletion Chr7 15101888 15101891 3
Deletion Chr11 16964832 16964833 1
Deletion Chr12 17832115 17832119 4
Deletion Chr4 19428001 19450000 21999 OsKitaake04g099601
Deletion Chr12 21409690 21409696 6
Deletion Chr1 22979525 22979543 18
Deletion Chr2 23216469 23216470 1
Deletion Chr5 24672749 24672752 3
Deletion Chr1 30238222 30238223 1
Deletion Chr3 34530370 34530372 2

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 8143087 8143090 2
Insertion Chr3 23801118 23801121 2
Insertion Chr5 2005414 2005417 2
Insertion Chr6 167322 167327 4
Insertion Chr6 18549098 18549103 4
Insertion Chr7 10722712 10722715 2
Insertion Chr11 9929658 9929661 2
Insertion Chr2 6961503 6961505 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 2637138 3331746 OsKitaake03g037500
Inversion Chr3 2637152 3331758 OsKitaake03g037500
Inversion Chr4 7813063 8506828 OsKitaake04g039700
Inversion Chr10 7875842 7903635
Inversion Chr10 7875850 7903644
Inversion Chr10 12960433 12978286
Inversion Chr10 12960434 12978278

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 7125658 Chr4 7816611 OsKitaake04g039700
Translocation Chr9 7125679 Chr4 7813088 OsKitaake04g039700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4591363	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g061600
SBS	Chr1	8009177	T-C	Hetero	INTERGENIC
SBS	Chr1	14344774	T-A	Homo	INTRON
SBS	Chr1	14344775	G-T	Homo	INTRON
SBS	Chr1	32592137	G-T	Homo	INTERGENIC
SBS	Chr2	8842422	C-A	Homo	INTERGENIC
SBS	Chr2	23066314	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	24554148	G-T	Hetero	INTRON
SBS	Chr3	4768530	C-T	Homo	INTERGENIC
SBS	Chr3	12294643	G-T	Hetero	INTERGENIC
SBS	Chr3	19808476	A-T	Hetero	INTERGENIC
SBS	Chr3	37588777	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g422100
SBS	Chr5	131274	C-T	Homo	INTERGENIC
SBS	Chr5	11291117	G-T	Homo	INTERGENIC
SBS	Chr6	1328439	A-G	Hetero	INTERGENIC
SBS	Chr6	29346248	G-C	Homo	INTERGENIC
SBS	Chr7	23971990	C-G	Hetero	UTR_5_PRIME
SBS	Chr8	19124127	C-A	Homo	INTERGENIC
SBS	Chr8	21022606	T-C	Homo	INTERGENIC
SBS	Chr9	3552978	A-G	Hetero	INTERGENIC
SBS	Chr9	14336729	C-T	Hetero	INTERGENIC
SBS	Chr10	613683	A-G	Hetero	INTERGENIC
SBS	Chr10	4655391	G-T	Hetero	INTERGENIC
SBS	Chr10	14783762	G-A	Hetero	INTERGENIC
SBS	Chr10	15365478	C-T	Hetero	INTERGENIC
SBS	Chr10	15365481	A-T	Hetero	INTERGENIC
SBS	Chr10	15365482	G-T	Hetero	INTERGENIC
SBS	Chr10	19004802	G-T	Hetero	INTERGENIC
SBS	Chr11	24835090	A-T	Hetero	INTERGENIC
SBS	Chr11	28980638	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g237200
SBS	Chr12	10926781	C-T	Hetero	INTERGENIC
SBS	Chr12	17224353	T-C	Hetero	INTERGENIC
SBS	Chr12	18315360	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	22286858	C-T	Homo	INTERGENIC
SBS	Chr12	22286859	A-T	Homo	INTERGENIC
SBS	Chr12	27071270	G-T	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	588444	588468	24	OsKitaake07g006500
Deletion	Chr12	3137600	3137606	6
Deletion	Chr9	3235387	3235399	12
Deletion	Chr12	3824133	3824135	2
Deletion	Chr2	7356818	7356822	4
Deletion	Chr10	12407893	12407894	1
Deletion	Chr10	13527789	13527797	8
Deletion	Chr11	13914383	13914385	2
Deletion	Chr7	15101888	15101891	3
Deletion	Chr11	16964832	16964833	1
Deletion	Chr12	17832115	17832119	4
Deletion	Chr4	19428001	19450000	21999	OsKitaake04g099601
Deletion	Chr12	21409690	21409696	6
Deletion	Chr1	22979525	22979543	18
Deletion	Chr2	23216469	23216470	1
Deletion	Chr5	24672749	24672752	3
Deletion	Chr1	30238222	30238223	1
Deletion	Chr3	34530370	34530372	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2637138	3331746	OsKitaake03g037500
Inversion	Chr3	2637152	3331758	OsKitaake03g037500
Inversion	Chr4	7813063	8506828	OsKitaake04g039700
Inversion	Chr10	7875842	7903635
Inversion	Chr10	7875850	7903644
Inversion	Chr10	12960433	12978286
Inversion	Chr10	12960434	12978278

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes