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Mutant Information

Mutant Name	FN1182-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1182-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9871583 A-G Hetero INTERGENIC
SBS Chr1 16561739 G-A Hetero INTERGENIC
SBS Chr1 23342444 C-T Hetero INTERGENIC
SBS Chr1 27129588 C-A Hetero INTERGENIC
SBS Chr2 14861399 A-T Hetero INTERGENIC
SBS Chr2 14866922 T-A Hetero INTERGENIC
SBS Chr2 14866924 T-C Hetero INTERGENIC
SBS Chr3 7508661 A-G Hetero INTRON
SBS Chr3 14817909 C-T Homo INTERGENIC
SBS Chr3 20376286 C-T Homo INTERGENIC
SBS Chr3 22230226 G-T Homo INTERGENIC
SBS Chr3 32775117 A-G Homo INTERGENIC
SBS Chr3 35695586 G-A Homo INTERGENIC
SBS Chr3 35819325 T-A Hetero INTERGENIC
SBS Chr4 287207 C-T Homo INTERGENIC
SBS Chr4 15315293 T-A Hetero INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 3906421 T-C Hetero INTERGENIC
SBS Chr5 23118639 C-T Hetero SYNONYMOUS_CODING
SBS Chr6 3350657 G-A Homo INTRON
SBS Chr8 809162 G-T Hetero INTERGENIC
SBS Chr8 4790014 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g054400
SBS Chr8 4790015 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g054400
SBS Chr8 14265888 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g112233
SBS Chr8 17945619 C-G Hetero INTERGENIC
SBS Chr8 28249997 T-A Hetero INTERGENIC
SBS Chr8 28965117 T-G Hetero UTR_3_PRIME
SBS Chr10 10231154 C-T Hetero INTERGENIC
SBS Chr11 14354877 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g120100
SBS Chr11 15044531 T-A Hetero INTERGENIC
SBS Chr12 4733706 T-C Homo INTERGENIC
SBS Chr12 8828693 G-A Hetero INTERGENIC
SBS Chr12 10610958 C-T Hetero INTERGENIC
SBS Chr12 25908355 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g214100
SBS Chr12 26390667 A-G Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 934862 934877 15
Deletion Chr6 1489111 1489117 6
Deletion Chr7 2850971 2851292 321
Deletion Chr11 6120879 6120888 9
Deletion Chr4 7275645 7275648 3
Deletion Chr5 10323146 10323147 1
Deletion Chr10 16224767 16224768 1
Deletion Chr3 17891967 17891969 2
Deletion Chr10 18073642 18073644 2
Deletion Chr5 21581724 21581729 5
Deletion Chr3 22184990 22184992 2
Deletion Chr3 23877119 23877120 1
Deletion Chr1 26171849 26171854 5
Deletion Chr4 35995377 35995391 14

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3891005 3891009 3
Insertion Chr1 13087880 13087883 2
Insertion Chr3 8008123 8008126 2
Insertion Chr5 2092141 2092144 2
Insertion Chr6 3314139 3314142 2
Insertion Chr7 168281 168284 2
Insertion Chr7 24561726 24561729 2
Insertion Chr9 11423034 11423038 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 8099392 8213237 OsKitaake01g101400
Inversion Chr1 8099405 8102408 OsKitaake01g101400
Inversion Chr1 12402562 12485937 OsKitaake01g150700
Inversion Chr1 12402574 12485941 OsKitaake01g150700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 8919986 Chr10 13784016 OsKitaake10g084200
Translocation Chr12 8919987 Chr10 13785816 OsKitaake10g084200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9871583	A-G	Hetero	INTERGENIC
SBS	Chr1	16561739	G-A	Hetero	INTERGENIC
SBS	Chr1	23342444	C-T	Hetero	INTERGENIC
SBS	Chr1	27129588	C-A	Hetero	INTERGENIC
SBS	Chr2	14861399	A-T	Hetero	INTERGENIC
SBS	Chr2	14866922	T-A	Hetero	INTERGENIC
SBS	Chr2	14866924	T-C	Hetero	INTERGENIC
SBS	Chr3	7508661	A-G	Hetero	INTRON
SBS	Chr3	14817909	C-T	Homo	INTERGENIC
SBS	Chr3	20376286	C-T	Homo	INTERGENIC
SBS	Chr3	22230226	G-T	Homo	INTERGENIC
SBS	Chr3	32775117	A-G	Homo	INTERGENIC
SBS	Chr3	35695586	G-A	Homo	INTERGENIC
SBS	Chr3	35819325	T-A	Hetero	INTERGENIC
SBS	Chr4	287207	C-T	Homo	INTERGENIC
SBS	Chr4	15315293	T-A	Hetero	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	3906421	T-C	Hetero	INTERGENIC
SBS	Chr5	23118639	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr6	3350657	G-A	Homo	INTRON
SBS	Chr8	809162	G-T	Hetero	INTERGENIC
SBS	Chr8	4790014	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g054400
SBS	Chr8	4790015	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g054400
SBS	Chr8	14265888	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g112233
SBS	Chr8	17945619	C-G	Hetero	INTERGENIC
SBS	Chr8	28249997	T-A	Hetero	INTERGENIC
SBS	Chr8	28965117	T-G	Hetero	UTR_3_PRIME
SBS	Chr10	10231154	C-T	Hetero	INTERGENIC
SBS	Chr11	14354877	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g120100
SBS	Chr11	15044531	T-A	Hetero	INTERGENIC
SBS	Chr12	4733706	T-C	Homo	INTERGENIC
SBS	Chr12	8828693	G-A	Hetero	INTERGENIC
SBS	Chr12	10610958	C-T	Hetero	INTERGENIC
SBS	Chr12	25908355	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g214100
SBS	Chr12	26390667	A-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	934862	934877	15
Deletion	Chr6	1489111	1489117	6
Deletion	Chr7	2850971	2851292	321
Deletion	Chr11	6120879	6120888	9
Deletion	Chr4	7275645	7275648	3
Deletion	Chr5	10323146	10323147	1
Deletion	Chr10	16224767	16224768	1
Deletion	Chr3	17891967	17891969	2
Deletion	Chr10	18073642	18073644	2
Deletion	Chr5	21581724	21581729	5
Deletion	Chr3	22184990	22184992	2
Deletion	Chr3	23877119	23877120	1
Deletion	Chr1	26171849	26171854	5
Deletion	Chr4	35995377	35995391	14

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	8099392	8213237	OsKitaake01g101400
Inversion	Chr1	8099405	8102408	OsKitaake01g101400
Inversion	Chr1	12402562	12485937	OsKitaake01g150700
Inversion	Chr1	12402574	12485941	OsKitaake01g150700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes