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Mutant Information

Mutant Name	FN1184-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1184-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3848838 T-C Hetero INTERGENIC
SBS Chr1 16270126 A-T Hetero INTERGENIC
SBS Chr1 18104565 A-G Hetero UTR_5_PRIME
SBS Chr1 19991783 G-A Homo INTERGENIC
SBS Chr1 20391613 T-A Homo INTERGENIC
SBS Chr1 28313617 A-T Hetero INTERGENIC
SBS Chr1 30108288 T-A Homo INTERGENIC
SBS Chr1 30108289 T-A Homo INTERGENIC
SBS Chr2 2814073 T-C Hetero INTERGENIC
SBS Chr2 17713935 A-G Homo INTERGENIC
SBS Chr3 27060305 G-A Homo INTRON
SBS Chr3 27214712 T-C Homo INTERGENIC
SBS Chr3 27569502 T-G Homo INTERGENIC
SBS Chr3 27937282 G-T Homo INTERGENIC
SBS Chr3 27937283 C-T Homo INTERGENIC
SBS Chr4 24818310 C-T Homo INTERGENIC
SBS Chr4 34680422 C-T Hetero INTERGENIC
SBS Chr5 9153830 G-A Hetero INTERGENIC
SBS Chr5 11902533 G-T Hetero INTERGENIC
SBS Chr5 14093673 A-G Hetero INTERGENIC
SBS Chr5 17979628 A-G Hetero INTERGENIC
SBS Chr5 18516303 C-G Hetero INTRON
SBS Chr5 19152103 T-G Hetero INTERGENIC
SBS Chr5 19990099 C-G Hetero INTERGENIC
SBS Chr6 18806565 C-T Hetero INTERGENIC
SBS Chr6 19815185 G-C Hetero INTERGENIC
SBS Chr6 20035016 C-T Hetero INTERGENIC
SBS Chr6 20232300 C-T Hetero INTERGENIC
SBS Chr7 8838692 T-G Hetero UTR_5_PRIME
SBS Chr7 9266363 A-G Hetero INTRON
SBS Chr7 11236723 G-A Hetero INTERGENIC
SBS Chr7 11704275 G-A Hetero INTRON
SBS Chr7 11774164 A-G Hetero INTERGENIC
SBS Chr7 15842420 T-G Hetero INTERGENIC
SBS Chr8 12957978 T-C Hetero INTERGENIC
SBS Chr8 15206910 A-T Hetero INTERGENIC
SBS Chr8 18731848 T-C Homo INTERGENIC
SBS Chr9 347357 T-C Hetero INTERGENIC
SBS Chr9 21196102 A-G Hetero INTERGENIC
SBS Chr9 22279159 G-A Homo INTERGENIC
SBS Chr10 4824035 G-C Hetero INTERGENIC
SBS Chr11 6737305 T-A Hetero INTERGENIC
SBS Chr11 8362355 G-A Hetero SYNONYMOUS_CODING
SBS Chr11 8362356 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g091200
SBS Chr11 14088068 T-C Hetero INTRON
SBS Chr12 14165068 C-T Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3926040 3926044 4
Deletion Chr10 6378431 6378443 12
Deletion Chr1 7869225 7869238 13
Deletion Chr6 10187839 10187840 1
Deletion Chr2 17814669 17814677 8
Deletion Chr8 18024492 18024493 1
Deletion Chr2 19720363 19720366 3
Deletion Chr1 20458001 20469000 10999 2
Deletion Chr1 25933910 25933912 2
Deletion Chr2 33194778 33194792 14
Deletion Chr4 36284189 36284197 8

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11735511 11735514 2
Insertion Chr1 37336729 37336734 4
Insertion Chr3 29644383 29644386 2
Insertion Chr4 15074681 15074684 2
Insertion Chr4 35631691 35631695 3
Insertion Chr8 5270627 5270630 2
Insertion Chr11 29195544 29195547 2
Insertion Chr2 33435361 33435366 4

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3848838	T-C	Hetero	INTERGENIC
SBS	Chr1	16270126	A-T	Hetero	INTERGENIC
SBS	Chr1	18104565	A-G	Hetero	UTR_5_PRIME
SBS	Chr1	19991783	G-A	Homo	INTERGENIC
SBS	Chr1	20391613	T-A	Homo	INTERGENIC
SBS	Chr1	28313617	A-T	Hetero	INTERGENIC
SBS	Chr1	30108288	T-A	Homo	INTERGENIC
SBS	Chr1	30108289	T-A	Homo	INTERGENIC
SBS	Chr2	2814073	T-C	Hetero	INTERGENIC
SBS	Chr2	17713935	A-G	Homo	INTERGENIC
SBS	Chr3	27060305	G-A	Homo	INTRON
SBS	Chr3	27214712	T-C	Homo	INTERGENIC
SBS	Chr3	27569502	T-G	Homo	INTERGENIC
SBS	Chr3	27937282	G-T	Homo	INTERGENIC
SBS	Chr3	27937283	C-T	Homo	INTERGENIC
SBS	Chr4	24818310	C-T	Homo	INTERGENIC
SBS	Chr4	34680422	C-T	Hetero	INTERGENIC
SBS	Chr5	9153830	G-A	Hetero	INTERGENIC
SBS	Chr5	11902533	G-T	Hetero	INTERGENIC
SBS	Chr5	14093673	A-G	Hetero	INTERGENIC
SBS	Chr5	17979628	A-G	Hetero	INTERGENIC
SBS	Chr5	18516303	C-G	Hetero	INTRON
SBS	Chr5	19152103	T-G	Hetero	INTERGENIC
SBS	Chr5	19990099	C-G	Hetero	INTERGENIC
SBS	Chr6	18806565	C-T	Hetero	INTERGENIC
SBS	Chr6	19815185	G-C	Hetero	INTERGENIC
SBS	Chr6	20035016	C-T	Hetero	INTERGENIC
SBS	Chr6	20232300	C-T	Hetero	INTERGENIC
SBS	Chr7	8838692	T-G	Hetero	UTR_5_PRIME
SBS	Chr7	9266363	A-G	Hetero	INTRON
SBS	Chr7	11236723	G-A	Hetero	INTERGENIC
SBS	Chr7	11704275	G-A	Hetero	INTRON
SBS	Chr7	11774164	A-G	Hetero	INTERGENIC
SBS	Chr7	15842420	T-G	Hetero	INTERGENIC
SBS	Chr8	12957978	T-C	Hetero	INTERGENIC
SBS	Chr8	15206910	A-T	Hetero	INTERGENIC
SBS	Chr8	18731848	T-C	Homo	INTERGENIC
SBS	Chr9	347357	T-C	Hetero	INTERGENIC
SBS	Chr9	21196102	A-G	Hetero	INTERGENIC
SBS	Chr9	22279159	G-A	Homo	INTERGENIC
SBS	Chr10	4824035	G-C	Hetero	INTERGENIC
SBS	Chr11	6737305	T-A	Hetero	INTERGENIC
SBS	Chr11	8362355	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	8362356	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g091200
SBS	Chr11	14088068	T-C	Hetero	INTRON
SBS	Chr12	14165068	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3926040	3926044	4
Deletion	Chr10	6378431	6378443	12
Deletion	Chr1	7869225	7869238	13
Deletion	Chr6	10187839	10187840	1
Deletion	Chr2	17814669	17814677	8
Deletion	Chr8	18024492	18024493	1
Deletion	Chr2	19720363	19720366	3
Deletion	Chr1	20458001	20469000	10999	2
Deletion	Chr1	25933910	25933912	2
Deletion	Chr2	33194778	33194792	14
Deletion	Chr4	36284189	36284197	8

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes