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| Mutant Information |
|---|
| Mutant Name | FN1186-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1186-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 87011 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g001200 |
| SBS | Chr2 | 36275862 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 13893583 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26391869 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 29313338 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31578856 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 31612135 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 31612136 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 4207435 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4843266 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 18667668 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 20603046 | A-G | Homo | INTRON | |
| SBS | Chr5 | 27166233 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 27492201 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 11598033 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 28817089 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15225406 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 22240629 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g187600 |
| SBS | Chr8 | 10014959 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 12494561 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13615849 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 15457882 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 18870699 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 22124392 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g179600 |
| SBS | Chr11 | 8784212 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10301953 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19686316 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21316743 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 23116594 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 22949 | A-C | Hetero | INTRON | |
| SBS | Chr12 | 1803134 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g026900 |
| SBS | Chr12 | 11637864 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12008565 | C-T | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 913937 | 913938 | 1 | |
| Deletion | Chr2 | 966748 | 966751 | 3 | |
| Deletion | Chr12 | 1707295 | 1707296 | 1 | OsKitaake12g025500 |
| Deletion | Chr12 | 5206594 | 5206596 | 2 | |
| Deletion | Chr1 | 5763142 | 5763153 | 11 | OsKitaake01g073208 |
| Deletion | Chr9 | 11069213 | 11069224 | 11 | |
| Deletion | Chr7 | 13538238 | 13538239 | 1 | |
| Deletion | Chr3 | 25511129 | 25511140 | 11 | |
| Deletion | Chr3 | 31612379 | 31612380 | 1 | |
| Deletion | Chr1 | 40236002 | 40236009 | 7 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 19252260 | 19252263 | 2 | |
| Insertion | Chr12 | 682596 | 682599 | 2 | |
| Insertion | Chr3 | 8671974 | 8671978 | 3 | |
| Insertion | Chr12 | 11211139 | 11211141 | 1 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 1607726 | Chr1 | 32465037 | 2 |
| Translocation | Chr8 | 4799798 | Chr1 | 32469891 | OsKitaake01g328800 |
| Translocation | Chr8 | 5439039 | Chr7 | 27024782 | 2 |
| Translocation | Chr8 | 5439045 | Chr7 | 27017358 | 2 |
| Translocation | Chr7 | 22762643 | Chr3 | 4007140 | OsKitaake07g195300 |
| Translocation | Chr7 | 24231532 | Chr3 | 4007114 | OsKitaake07g215600 |