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| Mutant Information |
|---|
| Mutant Name | FN1188-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1188-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3040991 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 33255621 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 33306936 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 13419294 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 28255013 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 16231229 | A-G | Homo | INTRON | |
| SBS | Chr3 | 18517546 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 27771260 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 14908611 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22440235 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 20610674 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 20916175 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 22151058 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 18112026 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 1045634 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8581098 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 14020103 | A-T | Hetero | INTRON | |
| SBS | Chr10 | 5370792 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6348979 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 18117772 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 2513904 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 14291272 | T-C | Homo | INTRON | |
| SBS | Chr12 | 1059034 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1059035 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 2079845 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 16464149 | G-A | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 3631776 | 3631778 | 2 | OsKitaake09g018900 |
| Deletion | Chr4 | 6167001 | 6252000 | 84999 | 10 |
| Deletion | Chr11 | 6167510 | 6167511 | 1 | |
| Deletion | Chr2 | 6963661 | 6963664 | 3 | |
| Deletion | Chr1 | 8972679 | 8972681 | 2 | |
| Deletion | Chr5 | 8979568 | 8979590 | 22 | OsKitaake05g084600 |
| Deletion | Chr4 | 10131445 | 10131446 | 1 | |
| Deletion | Chr12 | 12079417 | 12079426 | 9 | |
| Deletion | Chr6 | 14512873 | 14512877 | 4 | |
| Deletion | Chr10 | 18848001 | 18864000 | 15999 | OsKitaake10g134200 |
| Deletion | Chr2 | 19850159 | 19850160 | 1 | |
| Deletion | Chr7 | 20911488 | 20911493 | 5 | |
| Deletion | Chr5 | 22871753 | 22871758 | 5 | |
| Deletion | Chr5 | 24270001 | 24295000 | 24999 | 3 |
| Deletion | Chr5 | 27037001 | 27065000 | 27999 | 7 |
| Deletion | Chr1 | 34794248 | 34794253 | 5 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 5594179 | 5594182 | 2 | |
| Insertion | Chr10 | 14787680 | 14787684 | 3 | |
| Insertion | Chr11 | 11613327 | 11613329 | 1 | |
| Insertion | Chr11 | 18803139 | 18803142 | 2 | |
| Insertion | Chr11 | 11259765 | 11259768 | 2 | OsKitaake11g107900  |
Inversions: 10
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 8360252 | 8561658 | OsKitaake10g053000 |
| Inversion | Chr10 | 8360320 | 8561664 | OsKitaake10g053000 |
| Inversion | Chr5 | 12619730 | 13601495 | |
| Inversion | Chr10 | 18767671 | 18846241 | |
| Inversion | Chr10 | 18767681 | 18843697 | |
| Inversion | Chr10 | 18867707 | 19448300 | |
| Inversion | Chr10 | 18883250 | 19447756 | |
| Inversion | Chr3 | 20184420 | 20252681 | |
| Inversion | Chr5 | 27012554 | 27036517 | |
| Inversion | Chr5 | 27014310 | 27061466 | OsKitaake05g242700 |