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Mutant Information

Mutant Name	FN1190-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1190-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7595345 A-G Hetero INTERGENIC
SBS Chr1 19447755 T-C Hetero INTERGENIC
SBS Chr1 22247880 A-T Hetero INTERGENIC
SBS Chr1 22247881 C-T Hetero INTERGENIC
SBS Chr2 681811 C-T Hetero INTERGENIC
SBS Chr2 14468591 C-T Hetero INTERGENIC
SBS Chr2 20139055 C-A Hetero INTERGENIC
SBS Chr2 22694826 A-T Hetero INTERGENIC
SBS Chr2 28870981 T-A Hetero INTERGENIC
SBS Chr3 18758297 A-T Hetero INTERGENIC
SBS Chr3 37505191 A-T Homo INTRON
SBS Chr4 8026501 T-C Homo INTERGENIC
SBS Chr4 19068986 T-C Homo INTERGENIC
SBS Chr4 33159709 G-A Homo INTERGENIC
SBS Chr4 34835936 A-G Homo INTERGENIC
SBS Chr5 3170969 A-G Homo INTERGENIC
SBS Chr5 27284261 T-A Hetero INTERGENIC
SBS Chr6 6408762 C-T Hetero INTERGENIC
SBS Chr6 6491378 T-C Homo NON_SYNONYMOUS_CODING OsKitaake06g084700
SBS Chr6 10862073 G-A Hetero INTRON
SBS Chr6 14962502 C-G Homo INTERGENIC
SBS Chr6 18732800 C-T Homo INTERGENIC
SBS Chr6 18744274 C-T Homo INTERGENIC
SBS Chr6 30562468 G-A Homo NON_SYNONYMOUS_CODING OsKitaake06g287800
SBS Chr7 29555062 C-A Hetero INTERGENIC
SBS Chr8 10495634 A-T Homo INTERGENIC
SBS Chr8 12539727 C-T Hetero INTERGENIC
SBS Chr8 22918257 A-T Hetero INTERGENIC
SBS Chr8 28505644 T-C Hetero INTERGENIC
SBS Chr8 28782130 C-T Hetero INTRON
SBS Chr9 15740092 G-A Homo INTERGENIC
SBS Chr10 3715177 T-A Hetero INTERGENIC
SBS Chr10 18497560 G-T Hetero INTRON
SBS Chr11 6039545 G-A Hetero INTERGENIC
SBS Chr11 26237653 T-C Hetero INTERGENIC
SBS Chr12 11266366 G-C Hetero INTERGENIC
SBS Chr12 14894627 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1001001 1155000 153999 20
Deletion Chr2 5648126 5648128 2
Deletion Chr6 5847516 5847523 7
Deletion Chr8 6052492 6052498 6
Deletion Chr6 6672598 6672603 5
Deletion Chr8 11000276 11000283 7
Deletion Chr2 13030911 13030917 6
Deletion Chr5 21179738 21179746 8
Deletion Chr7 22299845 22299848 3
Deletion Chr11 24869070 24869084 14
Deletion Chr1 42860625 42860626 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42367388 42367391 2
Insertion Chr5 22809292 22809295 2
Insertion Chr5 29134963 29134966 2
Insertion Chr9 12292683 12292688 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 450241 458661 OsKitaake11g004600
Inversion Chr11 450254 1152448 OsKitaake11g014100
Inversion Chr7 4818903 4819144 OsKitaake07g059200
Inversion Chr3 18182498 18182802

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 925505 Chr3 22155740
Translocation Chr11 925540 Chr3 22155742

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7595345	A-G	Hetero	INTERGENIC
SBS	Chr1	19447755	T-C	Hetero	INTERGENIC
SBS	Chr1	22247880	A-T	Hetero	INTERGENIC
SBS	Chr1	22247881	C-T	Hetero	INTERGENIC
SBS	Chr2	681811	C-T	Hetero	INTERGENIC
SBS	Chr2	14468591	C-T	Hetero	INTERGENIC
SBS	Chr2	20139055	C-A	Hetero	INTERGENIC
SBS	Chr2	22694826	A-T	Hetero	INTERGENIC
SBS	Chr2	28870981	T-A	Hetero	INTERGENIC
SBS	Chr3	18758297	A-T	Hetero	INTERGENIC
SBS	Chr3	37505191	A-T	Homo	INTRON
SBS	Chr4	8026501	T-C	Homo	INTERGENIC
SBS	Chr4	19068986	T-C	Homo	INTERGENIC
SBS	Chr4	33159709	G-A	Homo	INTERGENIC
SBS	Chr4	34835936	A-G	Homo	INTERGENIC
SBS	Chr5	3170969	A-G	Homo	INTERGENIC
SBS	Chr5	27284261	T-A	Hetero	INTERGENIC
SBS	Chr6	6408762	C-T	Hetero	INTERGENIC
SBS	Chr6	6491378	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g084700
SBS	Chr6	10862073	G-A	Hetero	INTRON
SBS	Chr6	14962502	C-G	Homo	INTERGENIC
SBS	Chr6	18732800	C-T	Homo	INTERGENIC
SBS	Chr6	18744274	C-T	Homo	INTERGENIC
SBS	Chr6	30562468	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g287800
SBS	Chr7	29555062	C-A	Hetero	INTERGENIC
SBS	Chr8	10495634	A-T	Homo	INTERGENIC
SBS	Chr8	12539727	C-T	Hetero	INTERGENIC
SBS	Chr8	22918257	A-T	Hetero	INTERGENIC
SBS	Chr8	28505644	T-C	Hetero	INTERGENIC
SBS	Chr8	28782130	C-T	Hetero	INTRON
SBS	Chr9	15740092	G-A	Homo	INTERGENIC
SBS	Chr10	3715177	T-A	Hetero	INTERGENIC
SBS	Chr10	18497560	G-T	Hetero	INTRON
SBS	Chr11	6039545	G-A	Hetero	INTERGENIC
SBS	Chr11	26237653	T-C	Hetero	INTERGENIC
SBS	Chr12	11266366	G-C	Hetero	INTERGENIC
SBS	Chr12	14894627	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1001001	1155000	153999	20
Deletion	Chr2	5648126	5648128	2
Deletion	Chr6	5847516	5847523	7
Deletion	Chr8	6052492	6052498	6
Deletion	Chr6	6672598	6672603	5
Deletion	Chr8	11000276	11000283	7
Deletion	Chr2	13030911	13030917	6
Deletion	Chr5	21179738	21179746	8
Deletion	Chr7	22299845	22299848	3
Deletion	Chr11	24869070	24869084	14
Deletion	Chr1	42860625	42860626	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	450241	458661	OsKitaake11g004600
Inversion	Chr11	450254	1152448	OsKitaake11g014100
Inversion	Chr7	4818903	4819144	OsKitaake07g059200
Inversion	Chr3	18182498	18182802

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes