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| Mutant Information |
|---|
| Mutant Name | FN1192-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1192-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16271621 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 21122659 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 26629293 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 37734227 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 7301583 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14819465 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 18022221 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 19200115 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 25460557 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 35272858 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 31827605 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 33996436 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 9200655 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14997400 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 15984184 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 3016083 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 9262108 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 10368601 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 19462635 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20818709 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 28566062 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 30483070 | T-C | Homo | INTERGENIC | |
| SBS | Chr7 | 26718303 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 591026 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1964610 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 2395204 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16170039 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6785458 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 934344 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 17532526 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24153022 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 24259908 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 17345971 | A-T | Hetero | INTERGENIC |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1461890 | 1461921 | 31 | |
| Deletion | Chr10 | 3618492 | 3618493 | 1 | |
| Deletion | Chr10 | 6584558 | 6584573 | 15 | |
| Deletion | Chr11 | 9270823 | 9270831 | 8 | |
| Deletion | Chr11 | 11102001 | 11118000 | 15999 | OsKitaake11g107000 |
| Deletion | Chr3 | 12419614 | 12419627 | 13 | OsKitaake03g167200 |
| Deletion | Chr2 | 16839167 | 16839170 | 3 | |
| Deletion | Chr3 | 17602288 | 17602290 | 2 | |
| Deletion | Chr12 | 18367818 | 18367820 | 2 | |
| Deletion | Chr7 | 20549589 | 20549591 | 2 | |
| Deletion | Chr8 | 20743001 | 20756000 | 12999 | OsKitaake08g154800 |
| Deletion | Chr5 | 22262454 | 22262768 | 314 | OsKitaake05g182000 |
| Deletion | Chr12 | 22515492 | 22515494 | 2 | |
| Deletion | Chr7 | 22588681 | 22588749 | 68 | |
| Deletion | Chr3 | 27710802 | 27710804 | 2 | |
| Deletion | Chr4 | 31802001 | 31829000 | 26999 | 3 |
| Deletion | Chr1 | 43059753 | 43059781 | 28 |
Insertions: 7
Inversions: 76
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 34777 | 35013 | OsKitaake12g000400 |
| Inversion | Chr12 | 79312 | 79607 | OsKitaake12g000900 |
| Inversion | Chr12 | 108096 | 108456 | OsKitaake12g001100 |
| Inversion | Chr12 | 905119 | 905443 | |
| Inversion | Chr2 | 1554225 | 1554479 | OsKitaake02g024300 |
| Inversion | Chr6 | 2125400 | 2125537 | OsKitaake06g027000 |
| Inversion | Chr8 | 2932698 | 2933205 | |
| Inversion | Chr2 | 3445112 | 3445362 | OsKitaake02g050200 |
| Inversion | Chr1 | 4226441 | 4226581 | OsKitaake01g056500 |
| Inversion | Chr1 | 5443707 | 5443877 | OsKitaake01g070200 |
| Inversion | Chr9 | 5599361 | 5599546 | |
| Inversion | Chr6 | 5709610 | 5709733 | OsKitaake06g075000 |
| Inversion | Chr5 | 6329482 | 6329784 | |
| Inversion | Chr2 | 6743548 | 6743738 | OsKitaake02g091900 |
| Inversion | Chr6 | 6927791 | 6928068 | |
| Inversion | Chr4 | 8242262 | 8242507 | OsKitaake04g043000 |
| Inversion | Chr9 | 10353208 | 10353472 | |
| Inversion | Chr3 | 10868754 | 11296407 | |
| Inversion | Chr5 | 10951323 | 10951478 | OsKitaake05g094000 |
| Inversion | Chr8 | 11522648 | 11522929 | OsKitaake08g102000 |
| Inversion | Chr8 | 11997972 | 11998151 | OsKitaake08g104900 |
| Inversion | Chr7 | 12447166 | 12447337 | |
| Inversion | Chr3 | 12499814 | 12500028 | OsKitaake03g168700 |
| Inversion | Chr12 | 13331897 | 13332259 | OsKitaake12g110800 |
| Inversion | Chr9 | 13396693 | 13397122 | |
| Inversion | Chr7 | 13485624 | 13485931 | |
| Inversion | Chr1 | 13649499 | 13649893 | |
| Inversion | Chr9 | 13842979 | 13843097 | OsKitaake09g093600 |
| Inversion | Chr7 | 14113074 | 14113223 | OsKitaake07g121600 |
| Inversion | Chr11 | 14195133 | 14195389 | OsKitaake11g118500 |
| Inversion | Chr1 | 14491385 | 14491565 | OsKitaake01g164800 |
| Inversion | Chr7 | 15261267 | 15261638 | |
| Inversion | Chr6 | 15504049 | 15504306 | OsKitaake06g152600 |
| Inversion | Chr10 | 15570594 | 15570807 | OsKitaake10g100700 |
| Inversion | Chr3 | 15970000 | 15970147 | OsKitaake03g204400 |
| Inversion | Chr3 | 16057238 | 16057632 | |
| Inversion | Chr3 | 16107776 | 16107946 | OsKitaake03g205500 |
| Inversion | Chr3 | 16529457 | 16529633 | |
| Inversion | Chr4 | 17898596 | 17898932 | OsKitaake04g090100 |
| Inversion | Chr8 | 17951581 | 17951992 | |
| Inversion | Chr2 | 18066523 | 18066906 | |
| Inversion | Chr6 | 18598936 | 18599149 | OsKitaake06g169600 |
| Inversion | Chr9 | 18887151 | 18887488 | OsKitaake09g150400 |
| Inversion | Chr9 | 19144818 | 19145088 | OsKitaake09g153600 |
| Inversion | Chr5 | 19502519 | 19502699 | |
| Inversion | Chr9 | 20902211 | 20902480 | |
| Inversion | Chr12 | 21711902 | 21712107 | |
| Inversion | Chr11 | 23196197 | 23196336 | OsKitaake11g184200 |
| Inversion | Chr7 | 25608643 | 25608824 | OsKitaake07g232900 |
| Inversion | Chr4 | 26365920 | 26366028 | |
| Inversion | Chr8 | 26973184 | 26973334 | |
| Inversion | Chr7 | 27019255 | 27019537 | OsKitaake07g252500 |
| Inversion | Chr4 | 27602600 | 27602853 | OsKitaake04g202500 |
| Inversion | Chr11 | 28051694 | 28051882 | |
| Inversion | Chr11 | 28221910 | 28222074 | OsKitaake11g231700 |
| Inversion | Chr5 | 28662050 | 28662305 | OsKitaake05g269000 |
| Inversion | Chr1 | 28823975 | 28824075 | |
| Inversion | Chr1 | 28997570 | 28997763 | OsKitaake01g281600 |
| Inversion | Chr11 | 29103397 | 29103656 | |
| Inversion | Chr3 | 29461663 | 29462000 | |
| Inversion | Chr3 | 29500441 | 29500676 | |
| Inversion | Chr5 | 29596362 | 29596655 | OsKitaake05g281900 |
| Inversion | Chr4 | 31047841 | 31048144 | |
| Inversion | Chr4 | 31373959 | 31374156 | OsKitaake04g246200 |
| Inversion | Chr4 | 31480517 | 31480804 | OsKitaake04g247500 |
| Inversion | Chr4 | 32445614 | 32445753 | |
| Inversion | Chr1 | 32854931 | 32855073 | OsKitaake01g333900 |
| Inversion | Chr4 | 33785274 | 33785470 | OsKitaake04g280800 |
| Inversion | Chr2 | 34266963 | 34267182 | OsKitaake02g356100 |
| Inversion | Chr1 | 34814845 | 34815018 | OsKitaake01g366600 |
| Inversion | Chr2 | 36237555 | 36237763 | OsKitaake02g383400 |
| Inversion | Chr1 | 36592274 | 36592444 | OsKitaake01g388800 |
| Inversion | Chr2 | 37014098 | 37014410 | OsKitaake02g397300 |
| Inversion | Chr1 | 37201368 | 37201674 | |
| Inversion | Chr1 | 40113503 | 40113665 | |
| Inversion | Chr1 | 44212030 | 44212195 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 13040363 | Chr2 | 19203260 | |
| Translocation | Chr6 | 14637583 | Chr2 | 19202576 | |
| Translocation | Chr12 | 26889771 | Chr4 | 21059995 | OsKitaake12g224600 |
| Translocation | Chr12 | 26890062 | Chr4 | 21058789 | OsKitaake12g224600 |