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Mutant Information

Mutant Name	FN1193-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1193-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 7984203 C-T Hetero INTERGENIC
SBS Chr2 26178422 T-A Homo INTERGENIC
SBS Chr2 26178439 A-G Homo INTERGENIC
SBS Chr3 9961847 G-A Hetero INTERGENIC
SBS Chr3 17192109 G-A Homo INTERGENIC
SBS Chr3 28102060 G-C Homo INTERGENIC
SBS Chr4 961875 T-A Hetero UTR_3_PRIME
SBS Chr4 11470408 A-T Hetero INTERGENIC
SBS Chr4 28564193 C-T Hetero INTERGENIC
SBS Chr4 29354570 G-A Hetero INTERGENIC
SBS Chr6 9767648 A-G Hetero INTERGENIC
SBS Chr7 15480001 C-T Hetero INTERGENIC
SBS Chr7 15643981 C-A Hetero INTERGENIC
SBS Chr7 21057918 A-C Homo INTERGENIC
SBS Chr8 10820042 C-T Homo INTERGENIC
SBS Chr8 14450506 C-A Hetero INTERGENIC
SBS Chr8 21204332 C-G Hetero INTERGENIC
SBS Chr10 19531765 A-G Hetero INTERGENIC
SBS Chr11 16245099 G-T Hetero INTERGENIC
SBS Chr12 2079297 C-T Hetero INTERGENIC
SBS Chr12 3309695 C-T Hetero UTR_3_PRIME
SBS Chr12 10859660 C-T Hetero INTERGENIC
SBS Chr12 19847992 T-C Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1030344 1030347 3
Deletion Chr9 1702905 1702918 13
Deletion Chr4 2405314 2405316 2
Deletion Chr10 7849959 7849962 3
Deletion Chr12 9611428 9611429 1
Deletion Chr1 10349250 10349377 127
Deletion Chr3 16147078 16147099 21
Deletion Chr2 18188979 18188991 12
Deletion Chr1 18319526 18319528 2
Deletion Chr2 20911898 20911900 2
Deletion Chr4 22273493 22273495 2
Deletion Chr2 23505417 23505419 2
Deletion Chr1 30945378 30945381 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5468392 5468395 2
Insertion Chr9 1454778 1454781 2
Insertion Chr11 29606741 29606744 2
Insertion Chr4 18215924 18215926 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3123230 3255594 OsKitaake12g045400
Inversion Chr1 26827327 27125784
Inversion Chr1 26827330 26832006

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 3368254 Chr1 27125785 OsKitaake03g047700
Translocation Chr7 21060142 Chr1 27665268 OsKitaake07g174200
Translocation Chr7 21060816 Chr1 26832005 OsKitaake07g174200
Translocation Chr11 26217561 Chr2 23205685

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	7984203	C-T	Hetero	INTERGENIC
SBS	Chr2	26178422	T-A	Homo	INTERGENIC
SBS	Chr2	26178439	A-G	Homo	INTERGENIC
SBS	Chr3	9961847	G-A	Hetero	INTERGENIC
SBS	Chr3	17192109	G-A	Homo	INTERGENIC
SBS	Chr3	28102060	G-C	Homo	INTERGENIC
SBS	Chr4	961875	T-A	Hetero	UTR_3_PRIME
SBS	Chr4	11470408	A-T	Hetero	INTERGENIC
SBS	Chr4	28564193	C-T	Hetero	INTERGENIC
SBS	Chr4	29354570	G-A	Hetero	INTERGENIC
SBS	Chr6	9767648	A-G	Hetero	INTERGENIC
SBS	Chr7	15480001	C-T	Hetero	INTERGENIC
SBS	Chr7	15643981	C-A	Hetero	INTERGENIC
SBS	Chr7	21057918	A-C	Homo	INTERGENIC
SBS	Chr8	10820042	C-T	Homo	INTERGENIC
SBS	Chr8	14450506	C-A	Hetero	INTERGENIC
SBS	Chr8	21204332	C-G	Hetero	INTERGENIC
SBS	Chr10	19531765	A-G	Hetero	INTERGENIC
SBS	Chr11	16245099	G-T	Hetero	INTERGENIC
SBS	Chr12	2079297	C-T	Hetero	INTERGENIC
SBS	Chr12	3309695	C-T	Hetero	UTR_3_PRIME
SBS	Chr12	10859660	C-T	Hetero	INTERGENIC
SBS	Chr12	19847992	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1030344	1030347	3
Deletion	Chr9	1702905	1702918	13
Deletion	Chr4	2405314	2405316	2
Deletion	Chr10	7849959	7849962	3
Deletion	Chr12	9611428	9611429	1
Deletion	Chr1	10349250	10349377	127
Deletion	Chr3	16147078	16147099	21
Deletion	Chr2	18188979	18188991	12
Deletion	Chr1	18319526	18319528	2
Deletion	Chr2	20911898	20911900	2
Deletion	Chr4	22273493	22273495	2
Deletion	Chr2	23505417	23505419	2
Deletion	Chr1	30945378	30945381	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3123230	3255594	OsKitaake12g045400
Inversion	Chr1	26827327	27125784
Inversion	Chr1	26827330	26832006

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes