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Mutant Information

Mutant Name	FN1195-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1195-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 26536869 A-G Hetero INTERGENIC
SBS Chr2 9479187 C-A Hetero INTERGENIC
SBS Chr2 9520174 A-G Homo INTERGENIC
SBS Chr2 15530886 C-G Homo INTERGENIC
SBS Chr2 18580475 A-G Homo INTERGENIC
SBS Chr3 25031722 G-C Homo INTERGENIC
SBS Chr3 36344709 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g403200
SBS Chr4 5145775 C-T Hetero INTERGENIC
SBS Chr4 8779106 C-G Hetero INTERGENIC
SBS Chr4 11564964 G-A Hetero INTERGENIC
SBS Chr4 18705641 T-A Hetero INTERGENIC
SBS Chr4 21154330 C-A Hetero UTR_3_PRIME
SBS Chr4 23347662 A-T Hetero UTR_3_PRIME
SBS Chr4 28906031 T-C Hetero INTERGENIC
SBS Chr4 33364737 C-A Hetero INTRON
SBS Chr5 5014944 G-C Hetero INTERGENIC
SBS Chr5 11110178 C-T Hetero INTERGENIC
SBS Chr5 14568199 G-A Homo INTERGENIC
SBS Chr5 19492128 G-T Homo INTERGENIC
SBS Chr5 22712340 C-T Hetero INTERGENIC
SBS Chr6 15603633 C-A Hetero INTERGENIC
SBS Chr6 20838498 C-T Homo INTERGENIC
SBS Chr6 26732979 G-C Homo INTERGENIC
SBS Chr7 13955438 A-G Hetero INTERGENIC
SBS Chr7 27587057 T-A Homo INTERGENIC
SBS Chr7 27587064 G-A Homo INTERGENIC
SBS Chr7 28752303 A-G Homo UTR_3_PRIME
SBS Chr8 12101124 C-T Homo INTERGENIC
SBS Chr10 8885119 G-A Homo INTERGENIC
SBS Chr10 8903597 C-T Homo INTERGENIC
SBS Chr10 10118571 C-T Hetero INTERGENIC
SBS Chr10 17983172 T-A Hetero INTERGENIC
SBS Chr11 13556080 C-A Homo INTERGENIC
SBS Chr12 403529 T-A Hetero INTERGENIC
SBS Chr12 16645364 T-C Homo INTERGENIC
SBS Chr12 21074242 C-T Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 977599 977601 2
Deletion Chr8 1350746 1350755 9
Deletion Chr1 1556272 1556277 5 OsKitaake01g018800
Deletion Chr8 3775293 3775301 8 OsKitaake08g042900
Deletion Chr6 5169424 5169425 1
Deletion Chr2 9518851 9518855 4
Deletion Chr11 10579698 10579707 9 OsKitaake11g104900
Deletion Chr1 11619987 11619990 3
Deletion Chr1 12566118 12566126 8
Deletion Chr7 13721001 13728000 6999
Deletion Chr7 14867492 14867500 8
Deletion Chr5 15689780 15689782 2
Deletion Chr3 23689733 23689738 5
Deletion Chr8 25588669 25588677 8
Deletion Chr7 27472747 27472758 11
Deletion Chr7 28553041 28553048 7
Deletion Chr2 28605417 28605418 1
Deletion Chr7 28820001 28862000 41999 9
Deletion Chr3 33379509 33379510 1
Deletion Chr2 34585763 34585764 1
Deletion Chr1 35787574 35787575 1 OsKitaake01g379100

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17581102 17581105 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 2710329 3254267
Inversion Chr5 2710330 3254269
Inversion Chr8 25366043 25421365
Inversion Chr8 25366049 25421366

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5084035 Chr3 24787113
Translocation Chr12 13893797 Chr10 19916442 2
Translocation Chr9 20001108 Chr7 28860361 2
Translocation Chr9 20001118 Chr7 28822634 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26536869	A-G	Hetero	INTERGENIC
SBS	Chr2	9479187	C-A	Hetero	INTERGENIC
SBS	Chr2	9520174	A-G	Homo	INTERGENIC
SBS	Chr2	15530886	C-G	Homo	INTERGENIC
SBS	Chr2	18580475	A-G	Homo	INTERGENIC
SBS	Chr3	25031722	G-C	Homo	INTERGENIC
SBS	Chr3	36344709	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g403200
SBS	Chr4	5145775	C-T	Hetero	INTERGENIC
SBS	Chr4	8779106	C-G	Hetero	INTERGENIC
SBS	Chr4	11564964	G-A	Hetero	INTERGENIC
SBS	Chr4	18705641	T-A	Hetero	INTERGENIC
SBS	Chr4	21154330	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	23347662	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	28906031	T-C	Hetero	INTERGENIC
SBS	Chr4	33364737	C-A	Hetero	INTRON
SBS	Chr5	5014944	G-C	Hetero	INTERGENIC
SBS	Chr5	11110178	C-T	Hetero	INTERGENIC
SBS	Chr5	14568199	G-A	Homo	INTERGENIC
SBS	Chr5	19492128	G-T	Homo	INTERGENIC
SBS	Chr5	22712340	C-T	Hetero	INTERGENIC
SBS	Chr6	15603633	C-A	Hetero	INTERGENIC
SBS	Chr6	20838498	C-T	Homo	INTERGENIC
SBS	Chr6	26732979	G-C	Homo	INTERGENIC
SBS	Chr7	13955438	A-G	Hetero	INTERGENIC
SBS	Chr7	27587057	T-A	Homo	INTERGENIC
SBS	Chr7	27587064	G-A	Homo	INTERGENIC
SBS	Chr7	28752303	A-G	Homo	UTR_3_PRIME
SBS	Chr8	12101124	C-T	Homo	INTERGENIC
SBS	Chr10	8885119	G-A	Homo	INTERGENIC
SBS	Chr10	8903597	C-T	Homo	INTERGENIC
SBS	Chr10	10118571	C-T	Hetero	INTERGENIC
SBS	Chr10	17983172	T-A	Hetero	INTERGENIC
SBS	Chr11	13556080	C-A	Homo	INTERGENIC
SBS	Chr12	403529	T-A	Hetero	INTERGENIC
SBS	Chr12	16645364	T-C	Homo	INTERGENIC
SBS	Chr12	21074242	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	977599	977601	2
Deletion	Chr8	1350746	1350755	9
Deletion	Chr1	1556272	1556277	5	OsKitaake01g018800
Deletion	Chr8	3775293	3775301	8	OsKitaake08g042900
Deletion	Chr6	5169424	5169425	1
Deletion	Chr2	9518851	9518855	4
Deletion	Chr11	10579698	10579707	9	OsKitaake11g104900
Deletion	Chr1	11619987	11619990	3
Deletion	Chr1	12566118	12566126	8
Deletion	Chr7	13721001	13728000	6999
Deletion	Chr7	14867492	14867500	8
Deletion	Chr5	15689780	15689782	2
Deletion	Chr3	23689733	23689738	5
Deletion	Chr8	25588669	25588677	8
Deletion	Chr7	27472747	27472758	11
Deletion	Chr7	28553041	28553048	7
Deletion	Chr2	28605417	28605418	1
Deletion	Chr7	28820001	28862000	41999	9
Deletion	Chr3	33379509	33379510	1
Deletion	Chr2	34585763	34585764	1
Deletion	Chr1	35787574	35787575	1	OsKitaake01g379100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2710329	3254267
Inversion	Chr5	2710330	3254269
Inversion	Chr8	25366043	25421365
Inversion	Chr8	25366049	25421366

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes