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| Mutant Information |
|---|
| Mutant Name | FN1196-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1196-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2090256 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 14192244 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 27251132 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g264900 |
| SBS | Chr1 | 32129394 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 36448924 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 3387301 | T-G | Hetero | INTRON | |
| SBS | Chr2 | 4756947 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 20266265 | A-G | Homo | INTRON | |
| SBS | Chr2 | 36021200 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 22829061 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 830545 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 16565062 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 19012582 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 25162282 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 9237624 | C-G | Homo | INTERGENIC | |
| SBS | Chr8 | 10932624 | A-T | Hetero | SPLICE_SITE_ACCEPTOR | OsKitaake08g098200 |
| SBS | Chr8 | 20072049 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 24550433 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr10 | 1028590 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 1935949 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11796137 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12432607 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 12432608 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12697560 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 15014936 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15808109 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15808110 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16758730 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 24337151 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 26002652 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g209600 |
| SBS | Chr11 | 26501457 | T-C | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 7274583 | 7274585 | 2 | |
| Deletion | Chr5 | 8056800 | 8056801 | 1 | OsKitaake05g079401 |
| Deletion | Chr6 | 9186074 | 9186091 | 17 | |
| Deletion | Chr11 | 12843785 | 12843793 | 8 | |
| Deletion | Chr6 | 18696153 | 18696154 | 1 | |
| Deletion | Chr4 | 20853538 | 20853540 | 2 | |
| Deletion | Chr4 | 21400240 | 21400241 | 1 | |
| Deletion | Chr1 | 26939832 | 26939833 | 1 | |
| Deletion | Chr4 | 28155543 | 28155544 | 1 | |
| Deletion | Chr3 | 28610213 | 28610214 | 1 | OsKitaake03g296600 |
| Deletion | Chr1 | 30707001 | 30818000 | 110999 | 15 |
| Deletion | Chr3 | 36082270 | 36082272 | 2 | |
| Deletion | Chr1 | 41649214 | 41649224 | 10 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 23525892 | 23525895 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 15634047 | 15913892 | OsKitaake11g127700 |
| Inversion | Chr11 | 15634056 | 15913897 | OsKitaake11g127700 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 13582644 | Chr4 | 9661050 | |
| Translocation | Chr11 | 18113161 | Chr9 | 502442 |