Search Kitaake

Mutant Information

Mutant Name	FN1197-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1197-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6098226 C-T Homo INTERGENIC
SBS Chr1 10524532 A-G Homo INTERGENIC
SBS Chr1 21310401 C-T Hetero INTERGENIC
SBS Chr2 6125366 C-A Homo INTERGENIC
SBS Chr2 6756179 T-G Homo INTERGENIC
SBS Chr2 20147897 T-C Homo INTRON
SBS Chr3 7438635 C-T Hetero INTERGENIC
SBS Chr3 15983337 T-A Homo INTERGENIC
SBS Chr3 26175323 G-A Hetero INTERGENIC
SBS Chr4 2439694 G-T Hetero INTERGENIC
SBS Chr4 4793435 C-T Hetero INTERGENIC
SBS Chr4 9271020 G-A Homo INTERGENIC
SBS Chr4 20331551 C-A Hetero INTERGENIC
SBS Chr4 20331556 C-T Hetero INTERGENIC
SBS Chr5 4317446 C-A Homo INTERGENIC
SBS Chr5 5490666 A-C Hetero INTERGENIC
SBS Chr5 12159275 A-T Homo INTERGENIC
SBS Chr6 940685 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g010300
SBS Chr6 8615463 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g106200
SBS Chr6 8615630 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g106200
SBS Chr6 12331547 C-T Hetero INTRON
SBS Chr6 19945700 T-C Hetero INTERGENIC
SBS Chr6 22761724 C-G Homo INTERGENIC
SBS Chr6 23639990 G-A Homo INTERGENIC
SBS Chr6 24220585 G-A Homo INTERGENIC
SBS Chr7 5014835 A-G Homo INTERGENIC
SBS Chr7 9721378 T-A Hetero INTERGENIC
SBS Chr7 11983702 A-G Hetero INTERGENIC
SBS Chr8 4614926 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g052000
SBS Chr8 5970953 C-T Hetero INTERGENIC
SBS Chr9 14747086 C-T Homo INTERGENIC
SBS Chr9 20172367 C-T Homo INTERGENIC
SBS Chr10 5339929 T-A Hetero INTERGENIC
SBS Chr11 20104235 A-T Homo INTERGENIC
SBS Chr12 3759760 C-G Homo INTERGENIC
SBS Chr12 10514820 T-A Homo INTERGENIC
SBS Chr12 17653636 T-A Hetero UTR_3_PRIME
SBS Chr12 19963106 G-A Hetero INTERGENIC
SBS Chr12 22905806 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 685001 725000 39999 7
Deletion Chr9 5015150 5015151 1
Deletion Chr12 12917251 12917259 8
Deletion Chr11 18910510 18910512 2
Deletion Chr1 20025003 20025019 16
Deletion Chr3 20035146 20035300 154
Deletion Chr4 21686807 21686813 6
Deletion Chr9 21822786 21822794 8
Deletion Chr5 23096675 23096687 12 OsKitaake05g192300
Deletion Chr8 24214210 24214217 7
Deletion Chr8 27257524 27257526 2
Deletion Chr6 27272033 27272035 2
Deletion Chr4 28237051 28237055 4
Deletion Chr3 30015161 30015162 1
Deletion Chr6 30292520 30292526 6
Deletion Chr4 30766633 30766638 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15278316 15278319 2
Insertion Chr8 28979252 28979255 2
Insertion Chr5 29939081 29939084 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 648837 682748 OsKitaake06g006700
Inversion Chr6 649608 723487

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6098226	C-T	Homo	INTERGENIC
SBS	Chr1	10524532	A-G	Homo	INTERGENIC
SBS	Chr1	21310401	C-T	Hetero	INTERGENIC
SBS	Chr2	6125366	C-A	Homo	INTERGENIC
SBS	Chr2	6756179	T-G	Homo	INTERGENIC
SBS	Chr2	20147897	T-C	Homo	INTRON
SBS	Chr3	7438635	C-T	Hetero	INTERGENIC
SBS	Chr3	15983337	T-A	Homo	INTERGENIC
SBS	Chr3	26175323	G-A	Hetero	INTERGENIC
SBS	Chr4	2439694	G-T	Hetero	INTERGENIC
SBS	Chr4	4793435	C-T	Hetero	INTERGENIC
SBS	Chr4	9271020	G-A	Homo	INTERGENIC
SBS	Chr4	20331551	C-A	Hetero	INTERGENIC
SBS	Chr4	20331556	C-T	Hetero	INTERGENIC
SBS	Chr5	4317446	C-A	Homo	INTERGENIC
SBS	Chr5	5490666	A-C	Hetero	INTERGENIC
SBS	Chr5	12159275	A-T	Homo	INTERGENIC
SBS	Chr6	940685	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g010300
SBS	Chr6	8615463	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g106200
SBS	Chr6	8615630	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g106200
SBS	Chr6	12331547	C-T	Hetero	INTRON
SBS	Chr6	19945700	T-C	Hetero	INTERGENIC
SBS	Chr6	22761724	C-G	Homo	INTERGENIC
SBS	Chr6	23639990	G-A	Homo	INTERGENIC
SBS	Chr6	24220585	G-A	Homo	INTERGENIC
SBS	Chr7	5014835	A-G	Homo	INTERGENIC
SBS	Chr7	9721378	T-A	Hetero	INTERGENIC
SBS	Chr7	11983702	A-G	Hetero	INTERGENIC
SBS	Chr8	4614926	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g052000
SBS	Chr8	5970953	C-T	Hetero	INTERGENIC
SBS	Chr9	14747086	C-T	Homo	INTERGENIC
SBS	Chr9	20172367	C-T	Homo	INTERGENIC
SBS	Chr10	5339929	T-A	Hetero	INTERGENIC
SBS	Chr11	20104235	A-T	Homo	INTERGENIC
SBS	Chr12	3759760	C-G	Homo	INTERGENIC
SBS	Chr12	10514820	T-A	Homo	INTERGENIC
SBS	Chr12	17653636	T-A	Hetero	UTR_3_PRIME
SBS	Chr12	19963106	G-A	Hetero	INTERGENIC
SBS	Chr12	22905806	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	685001	725000	39999	7
Deletion	Chr9	5015150	5015151	1
Deletion	Chr12	12917251	12917259	8
Deletion	Chr11	18910510	18910512	2
Deletion	Chr1	20025003	20025019	16
Deletion	Chr3	20035146	20035300	154
Deletion	Chr4	21686807	21686813	6
Deletion	Chr9	21822786	21822794	8
Deletion	Chr5	23096675	23096687	12	OsKitaake05g192300
Deletion	Chr8	24214210	24214217	7
Deletion	Chr8	27257524	27257526	2
Deletion	Chr6	27272033	27272035	2
Deletion	Chr4	28237051	28237055	4
Deletion	Chr3	30015161	30015162	1
Deletion	Chr6	30292520	30292526	6
Deletion	Chr4	30766633	30766638	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	648837	682748	OsKitaake06g006700
Inversion	Chr6	649608	723487

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes