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Mutant Information

Mutant Name	FN1198-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1198-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23503152 A-T Hetero INTERGENIC
SBS Chr1 24298269 A-G Hetero INTERGENIC
SBS Chr2 1102818 C-T Homo INTERGENIC
SBS Chr2 29000194 C-G Hetero INTERGENIC
SBS Chr3 6582356 G-A Homo INTERGENIC
SBS Chr3 27824370 T-A Homo INTRON
SBS Chr4 6338609 A-T Homo INTERGENIC
SBS Chr4 16992661 A-T Homo INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr5 1154704 G-A Hetero UTR_5_PRIME
SBS Chr5 5874834 G-A Homo INTERGENIC
SBS Chr5 16112237 G-A Hetero INTERGENIC
SBS Chr6 5441621 T-A Hetero INTERGENIC
SBS Chr6 5441622 T-A Hetero INTERGENIC
SBS Chr6 5573902 G-T Hetero INTERGENIC
SBS Chr7 3014466 G-A Hetero INTRON
SBS Chr7 3014467 A-T Hetero INTRON
SBS Chr7 3014468 A-T Hetero INTRON
SBS Chr7 3966044 A-G Hetero UTR_3_PRIME
SBS Chr7 13163725 T-A Hetero INTERGENIC
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 26229232 T-A Hetero INTRON
SBS Chr12 10350888 C-A Homo INTRON
SBS Chr12 12178753 C-T Hetero INTERGENIC
SBS Chr12 15617651 T-G Homo INTERGENIC
SBS Chr12 23834115 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 5683315 5683321 6
Deletion Chr6 6770631 6770633 2
Deletion Chr8 10534690 10534701 11 OsKitaake08g095150
Deletion Chr2 12968934 12968944 10
Deletion Chr9 17165860 17165862 2
Deletion Chr8 19564012 19564013 1
Deletion Chr2 22074356 22074360 4
Deletion Chr3 22696492 22696501 9
Deletion Chr4 22731001 22870000 138999 25
Deletion Chr12 26032380 26032393 13
Deletion Chr1 26340012 26340013 1
Deletion Chr11 29322000 29322001 1
Deletion Chr4 32832001 32866000 33999 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10699739 10699742 2
Insertion Chr5 821856 821859 2
Insertion Chr8 9986309 9986315 5
Insertion Chr8 29065524 29065528 3
Insertion Chr9 2667591 2667595 3
Insertion Chr9 10160983 10160987 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23503152	A-T	Hetero	INTERGENIC
SBS	Chr1	24298269	A-G	Hetero	INTERGENIC
SBS	Chr2	1102818	C-T	Homo	INTERGENIC
SBS	Chr2	29000194	C-G	Hetero	INTERGENIC
SBS	Chr3	6582356	G-A	Homo	INTERGENIC
SBS	Chr3	27824370	T-A	Homo	INTRON
SBS	Chr4	6338609	A-T	Homo	INTERGENIC
SBS	Chr4	16992661	A-T	Homo	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr5	1154704	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	5874834	G-A	Homo	INTERGENIC
SBS	Chr5	16112237	G-A	Hetero	INTERGENIC
SBS	Chr6	5441621	T-A	Hetero	INTERGENIC
SBS	Chr6	5441622	T-A	Hetero	INTERGENIC
SBS	Chr6	5573902	G-T	Hetero	INTERGENIC
SBS	Chr7	3014466	G-A	Hetero	INTRON
SBS	Chr7	3014467	A-T	Hetero	INTRON
SBS	Chr7	3014468	A-T	Hetero	INTRON
SBS	Chr7	3966044	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	13163725	T-A	Hetero	INTERGENIC
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	26229232	T-A	Hetero	INTRON
SBS	Chr12	10350888	C-A	Homo	INTRON
SBS	Chr12	12178753	C-T	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Homo	INTERGENIC
SBS	Chr12	23834115	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	5683315	5683321	6
Deletion	Chr6	6770631	6770633	2
Deletion	Chr8	10534690	10534701	11	OsKitaake08g095150
Deletion	Chr2	12968934	12968944	10
Deletion	Chr9	17165860	17165862	2
Deletion	Chr8	19564012	19564013	1
Deletion	Chr2	22074356	22074360	4
Deletion	Chr3	22696492	22696501	9
Deletion	Chr4	22731001	22870000	138999	25
Deletion	Chr12	26032380	26032393	13
Deletion	Chr1	26340012	26340013	1
Deletion	Chr11	29322000	29322001	1
Deletion	Chr4	32832001	32866000	33999	7

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes