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Mutant Information

Mutant Name	FN1200-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1200-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5030599 T-C Homo INTERGENIC
SBS Chr1 17113504 C-T Hetero INTERGENIC
SBS Chr1 29008383 A-T Homo INTERGENIC
SBS Chr1 29484724 T-C Hetero INTERGENIC
SBS Chr1 29486523 T-A Hetero INTERGENIC
SBS Chr2 2350442 C-T Homo INTERGENIC
SBS Chr2 9947480 C-T Hetero INTERGENIC
SBS Chr2 11575233 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g133700
SBS Chr2 16287953 A-G Hetero INTERGENIC
SBS Chr2 16287957 G-A Hetero INTERGENIC
SBS Chr2 17374588 G-T Hetero INTRON
SBS Chr2 35311974 C-T Homo INTRON
SBS Chr3 4555786 T-C Hetero INTRON
SBS Chr3 10218014 C-A Homo UTR_3_PRIME
SBS Chr3 12034421 C-T Homo INTERGENIC
SBS Chr3 12034422 A-T Homo INTERGENIC
SBS Chr3 15985659 G-A Homo INTERGENIC
SBS Chr4 585721 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g004300
SBS Chr4 3011734 G-A Hetero INTERGENIC
SBS Chr4 26000164 G-C Homo INTERGENIC
SBS Chr5 10378000 G-A Homo INTERGENIC
SBS Chr6 4518432 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g062300
SBS Chr6 15506473 G-A Homo INTERGENIC
SBS Chr7 7394947 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g082733
SBS Chr7 12227856 G-A Hetero INTERGENIC
SBS Chr7 24125048 G-T Hetero INTERGENIC
SBS Chr7 27316885 C-T Hetero INTERGENIC
SBS Chr8 5527024 G-C Hetero INTRON
SBS Chr8 7746509 G-A Hetero INTERGENIC
SBS Chr8 10508087 A-G Hetero INTERGENIC
SBS Chr9 18090144 G-A Hetero INTERGENIC
SBS Chr10 1820560 G-C Hetero INTERGENIC
SBS Chr10 7586562 C-T Hetero INTERGENIC
SBS Chr10 8956925 G-A Homo INTERGENIC
SBS Chr10 12353320 C-T Hetero INTERGENIC
SBS Chr11 21023743 G-A Hetero INTRON
SBS Chr11 25692270 A-G Hetero INTERGENIC
SBS Chr11 25853065 A-G Hetero INTERGENIC
SBS Chr12 6819499 T-A Hetero INTERGENIC
SBS Chr12 9734963 G-T Hetero INTERGENIC
SBS Chr12 10691684 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2999700 2999702 2
Deletion Chr6 3671198 3671206 8
Deletion Chr9 6498001 6582000 83999 6
Deletion Chr10 9508991 9509001 10
Deletion Chr6 10385265 10385266 1
Deletion Chr6 18765135 18765148 13
Deletion Chr6 19946523 19946533 10
Deletion Chr2 21340850 21340851 1
Deletion Chr1 22283056 22283067 11
Deletion Chr11 27247001 27283000 35999 5
Deletion Chr1 29091728 29091734 6
Deletion Chr1 31597273 31597278 5 OsKitaake01g317700
Deletion Chr3 35005008 35005009 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26680992 26680996 3
Insertion Chr2 21872971 21872974 2
Insertion Chr5 23268781 23268785 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 11612475 12144652

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 6499269 Chr4 33786843 OsKitaake04g280800
Translocation Chr9 6581058 Chr4 33787065 OsKitaake04g280800
Translocation Chr7 27953115 Chr4 33787076 2
Translocation Chr7 27953132 Chr4 34448231 OsKitaake07g262900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5030599	T-C	Homo	INTERGENIC
SBS	Chr1	17113504	C-T	Hetero	INTERGENIC
SBS	Chr1	29008383	A-T	Homo	INTERGENIC
SBS	Chr1	29484724	T-C	Hetero	INTERGENIC
SBS	Chr1	29486523	T-A	Hetero	INTERGENIC
SBS	Chr2	2350442	C-T	Homo	INTERGENIC
SBS	Chr2	9947480	C-T	Hetero	INTERGENIC
SBS	Chr2	11575233	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g133700
SBS	Chr2	16287953	A-G	Hetero	INTERGENIC
SBS	Chr2	16287957	G-A	Hetero	INTERGENIC
SBS	Chr2	17374588	G-T	Hetero	INTRON
SBS	Chr2	35311974	C-T	Homo	INTRON
SBS	Chr3	4555786	T-C	Hetero	INTRON
SBS	Chr3	10218014	C-A	Homo	UTR_3_PRIME
SBS	Chr3	12034421	C-T	Homo	INTERGENIC
SBS	Chr3	12034422	A-T	Homo	INTERGENIC
SBS	Chr3	15985659	G-A	Homo	INTERGENIC
SBS	Chr4	585721	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g004300
SBS	Chr4	3011734	G-A	Hetero	INTERGENIC
SBS	Chr4	26000164	G-C	Homo	INTERGENIC
SBS	Chr5	10378000	G-A	Homo	INTERGENIC
SBS	Chr6	4518432	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g062300
SBS	Chr6	15506473	G-A	Homo	INTERGENIC
SBS	Chr7	7394947	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g082733
SBS	Chr7	12227856	G-A	Hetero	INTERGENIC
SBS	Chr7	24125048	G-T	Hetero	INTERGENIC
SBS	Chr7	27316885	C-T	Hetero	INTERGENIC
SBS	Chr8	5527024	G-C	Hetero	INTRON
SBS	Chr8	7746509	G-A	Hetero	INTERGENIC
SBS	Chr8	10508087	A-G	Hetero	INTERGENIC
SBS	Chr9	18090144	G-A	Hetero	INTERGENIC
SBS	Chr10	1820560	G-C	Hetero	INTERGENIC
SBS	Chr10	7586562	C-T	Hetero	INTERGENIC
SBS	Chr10	8956925	G-A	Homo	INTERGENIC
SBS	Chr10	12353320	C-T	Hetero	INTERGENIC
SBS	Chr11	21023743	G-A	Hetero	INTRON
SBS	Chr11	25692270	A-G	Hetero	INTERGENIC
SBS	Chr11	25853065	A-G	Hetero	INTERGENIC
SBS	Chr12	6819499	T-A	Hetero	INTERGENIC
SBS	Chr12	9734963	G-T	Hetero	INTERGENIC
SBS	Chr12	10691684	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2999700	2999702	2
Deletion	Chr6	3671198	3671206	8
Deletion	Chr9	6498001	6582000	83999	6
Deletion	Chr10	9508991	9509001	10
Deletion	Chr6	10385265	10385266	1
Deletion	Chr6	18765135	18765148	13
Deletion	Chr6	19946523	19946533	10
Deletion	Chr2	21340850	21340851	1
Deletion	Chr1	22283056	22283067	11
Deletion	Chr11	27247001	27283000	35999	5
Deletion	Chr1	29091728	29091734	6
Deletion	Chr1	31597273	31597278	5	OsKitaake01g317700
Deletion	Chr3	35005008	35005009	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11612475	12144652

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes