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Mutant Information

Mutant Name	FN1202-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1202-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3319135 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g043300
SBS Chr1 31561667 A-C Hetero INTRON
SBS Chr2 2319503 C-T Hetero STOP_GAINED OsKitaake02g034400
SBS Chr2 20749670 A-G Hetero INTERGENIC
SBS Chr3 23002449 T-C Hetero INTERGENIC
SBS Chr3 23594279 T-A Hetero INTERGENIC
SBS Chr3 29049009 T-A Homo INTERGENIC
SBS Chr3 31305442 C-T Homo INTRON
SBS Chr4 28403796 C-T Hetero INTERGENIC
SBS Chr5 8212038 C-T Homo INTERGENIC
SBS Chr5 8512548 C-A Hetero INTERGENIC
SBS Chr5 8873648 G-T Hetero INTERGENIC
SBS Chr5 12814724 G-A Homo INTERGENIC
SBS Chr5 19727120 G-A Homo INTRON
SBS Chr5 21101380 C-T Hetero INTERGENIC
SBS Chr6 11958859 C-T Hetero INTRON
SBS Chr6 19095278 T-C Hetero INTERGENIC
SBS Chr6 20519697 A-G Hetero INTERGENIC
SBS Chr6 23831852 G-A Hetero INTRON
SBS Chr6 25865104 A-G Hetero INTERGENIC
SBS Chr6 26982520 G-C Homo SPLICE_SITE_REGION
SBS Chr7 8476191 A-G Homo SYNONYMOUS_CODING
SBS Chr8 13033943 T-C Hetero INTERGENIC
SBS Chr8 17599833 A-G Homo INTERGENIC
SBS Chr9 3907507 C-T Homo INTERGENIC
SBS Chr9 10805847 G-A Hetero INTERGENIC
SBS Chr9 10949585 C-T Homo INTERGENIC
SBS Chr9 17970058 A-G Hetero INTERGENIC
SBS Chr10 6204550 C-G Hetero INTERGENIC
SBS Chr10 19833514 T-C Hetero INTERGENIC
SBS Chr11 10727769 C-G Homo INTERGENIC
SBS Chr11 19079634 G-A Homo INTERGENIC
SBS Chr11 29554398 C-T Hetero INTERGENIC
SBS Chr12 9859507 G-A Hetero INTERGENIC
SBS Chr12 12714558 C-T Hetero INTERGENIC
SBS Chr12 20186812 T-G Hetero INTERGENIC
SBS Chr12 27013730 C-A Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2270959 2270972 13
Deletion Chr10 11004264 11004274 10
Deletion Chr6 14650605 14650609 4
Deletion Chr5 20045887 20045896 9
Deletion Chr5 20831454 20831457 3
Deletion Chr1 25194182 25194183 1
Deletion Chr2 34144308 34144309 1

Insertions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8265625 8265628 2
Insertion Chr1 29077620 29077624 3
Insertion Chr2 961137 961139 1 OsKitaake02g013900
Insertion Chr2 11405891 11405894 2
Insertion Chr2 12160477 12160480 2
Insertion Chr3 7646275 7646278 2
Insertion Chr6 5878477 5878480 2
Insertion Chr6 6915021 6915024 2
Insertion Chr6 7890827 7890830 2
Insertion Chr6 8324418 8324421 2
Insertion Chr10 3004789 3004793 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3319135	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g043300
SBS	Chr1	31561667	A-C	Hetero	INTRON
SBS	Chr2	2319503	C-T	Hetero	STOP_GAINED	OsKitaake02g034400
SBS	Chr2	20749670	A-G	Hetero	INTERGENIC
SBS	Chr3	23002449	T-C	Hetero	INTERGENIC
SBS	Chr3	23594279	T-A	Hetero	INTERGENIC
SBS	Chr3	29049009	T-A	Homo	INTERGENIC
SBS	Chr3	31305442	C-T	Homo	INTRON
SBS	Chr4	28403796	C-T	Hetero	INTERGENIC
SBS	Chr5	8212038	C-T	Homo	INTERGENIC
SBS	Chr5	8512548	C-A	Hetero	INTERGENIC
SBS	Chr5	8873648	G-T	Hetero	INTERGENIC
SBS	Chr5	12814724	G-A	Homo	INTERGENIC
SBS	Chr5	19727120	G-A	Homo	INTRON
SBS	Chr5	21101380	C-T	Hetero	INTERGENIC
SBS	Chr6	11958859	C-T	Hetero	INTRON
SBS	Chr6	19095278	T-C	Hetero	INTERGENIC
SBS	Chr6	20519697	A-G	Hetero	INTERGENIC
SBS	Chr6	23831852	G-A	Hetero	INTRON
SBS	Chr6	25865104	A-G	Hetero	INTERGENIC
SBS	Chr6	26982520	G-C	Homo	SPLICE_SITE_REGION
SBS	Chr7	8476191	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr8	13033943	T-C	Hetero	INTERGENIC
SBS	Chr8	17599833	A-G	Homo	INTERGENIC
SBS	Chr9	3907507	C-T	Homo	INTERGENIC
SBS	Chr9	10805847	G-A	Hetero	INTERGENIC
SBS	Chr9	10949585	C-T	Homo	INTERGENIC
SBS	Chr9	17970058	A-G	Hetero	INTERGENIC
SBS	Chr10	6204550	C-G	Hetero	INTERGENIC
SBS	Chr10	19833514	T-C	Hetero	INTERGENIC
SBS	Chr11	10727769	C-G	Homo	INTERGENIC
SBS	Chr11	19079634	G-A	Homo	INTERGENIC
SBS	Chr11	29554398	C-T	Hetero	INTERGENIC
SBS	Chr12	9859507	G-A	Hetero	INTERGENIC
SBS	Chr12	12714558	C-T	Hetero	INTERGENIC
SBS	Chr12	20186812	T-G	Hetero	INTERGENIC
SBS	Chr12	27013730	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2270959	2270972	13
Deletion	Chr10	11004264	11004274	10
Deletion	Chr6	14650605	14650609	4
Deletion	Chr5	20045887	20045896	9
Deletion	Chr5	20831454	20831457	3
Deletion	Chr1	25194182	25194183	1
Deletion	Chr2	34144308	34144309	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes