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| Mutant Information |
|---|
| Mutant Name | FN1203-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1203-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1434964 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 17669105 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 18169882 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 6753882 | A-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr2 | 15161162 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 30153314 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 32995117 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 850982 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 1795313 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 2663243 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 19310452 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 12822092 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 12822093 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 12822096 | T-G | Hetero | INTRON | |
| SBS | Chr7 | 13208612 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 23560161 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g206400 |
| SBS | Chr8 | 20785319 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 21680347 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9444859 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17026600 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 5924413 | C-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 11483233 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 12013292 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g111366 |
| SBS | Chr11 | 16270762 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 1981510 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 8713695 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 19386754 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 22476135 | C-T | Homo | INTRON | |
| SBS | Chr12 | 24486368 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g197500 |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 4446863 | 4446887 | 24 | |
| Deletion | Chr6 | 6306545 | 6306553 | 8 | |
| Deletion | Chr6 | 14464001 | 15235000 | 770999 | 31 |
| Deletion | Chr1 | 15072494 | 15072500 | 6 | OsKitaake01g143400 |
| Deletion | Chr6 | 15242001 | 15252000 | 9999 | |
| Deletion | Chr7 | 15669982 | 15669984 | 2 | |
| Deletion | Chr11 | 16236141 | 16236148 | 7 | |
| Deletion | Chr9 | 19357873 | 19357874 | 1 | |
| Deletion | Chr4 | 20424510 | 20424512 | 2 | |
| Deletion | Chr1 | 21448187 | 21448188 | 1 | |
| Deletion | Chr8 | 21930645 | 21930646 | 1 | |
| Deletion | Chr1 | 24835056 | 24835077 | 21 | |
| Deletion | Chr11 | 25317653 | 25317654 | 1 | |
| Deletion | Chr2 | 26144000 | 26144006 | 6 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 16285087 | 16285090 | 2 | |
| Insertion | Chr8 | 5944348 | 5944351 | 2 | |
| Insertion | Chr9 | 12773721 | 12773724 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 11598135 | 11863216 |