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Mutant Information

Mutant Name	FN1204-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1204-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14231075 C-T Homo INTERGENIC
SBS Chr2 4831201 T-A Hetero INTERGENIC
SBS Chr3 2931559 A-G Hetero INTRON
SBS Chr3 9183421 C-A Hetero INTERGENIC
SBS Chr3 10084966 C-T Homo UTR_5_PRIME
SBS Chr3 16415326 A-G Homo INTERGENIC
SBS Chr3 19170611 C-A Homo INTERGENIC
SBS Chr3 25978477 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g274000
SBS Chr3 27346089 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g282000
SBS Chr5 1238559 T-A Homo INTERGENIC
SBS Chr5 1520063 C-A Homo INTERGENIC
SBS Chr5 4654288 G-A Homo INTERGENIC
SBS Chr5 6393541 T-G Homo INTERGENIC
SBS Chr5 8184497 A-G Hetero INTERGENIC
SBS Chr5 13092321 G-T Homo INTERGENIC
SBS Chr6 3228287 G-A Homo INTERGENIC
SBS Chr6 15347347 A-G Homo INTERGENIC
SBS Chr6 20383383 T-C Hetero UTR_3_PRIME
SBS Chr7 1136746 A-G Hetero INTERGENIC
SBS Chr7 11044077 T-A Homo INTERGENIC
SBS Chr7 22076870 G-A Hetero INTERGENIC
SBS Chr8 3314032 T-G Hetero STOP_GAINED OsKitaake08g037000
SBS Chr9 1046941 T-G Homo INTERGENIC
SBS Chr9 10217541 A-G Hetero INTERGENIC
SBS Chr9 10226919 A-C Hetero INTERGENIC
SBS Chr9 11734395 T-C Hetero INTRON
SBS Chr9 15512768 C-T Hetero INTERGENIC
SBS Chr11 3317739 A-T Homo INTRON
SBS Chr11 6742322 G-T Hetero INTERGENIC
SBS Chr11 9043905 C-G Hetero INTERGENIC
SBS Chr11 13155872 G-A Hetero INTRON
SBS Chr11 13206365 C-A Hetero INTERGENIC
SBS Chr11 13919519 T-A Hetero INTERGENIC
SBS Chr11 17390570 C-A Hetero INTERGENIC
SBS Chr12 4078810 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g055500
SBS Chr12 11299789 G-A Hetero INTERGENIC
SBS Chr12 23627918 G-C Homo INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4071009 4071028 19
Deletion Chr6 4595127 4595137 10
Deletion Chr5 7467087 7467091 4
Deletion Chr8 9901196 9901198 2
Deletion Chr5 10928001 10937000 8999
Deletion Chr2 11727041 11727055 14
Deletion Chr8 16030001 16093000 62999 4
Deletion Chr8 16097001 16113000 15999 2
Deletion Chr11 16362392 16362395 3
Deletion Chr10 17082604 17082607 3
Deletion Chr1 17878114 17878118 4
Deletion Chr6 17963678 17963679 1
Deletion Chr5 20094210 20094211 1
Deletion Chr2 21492735 21492737 2
Deletion Chr1 21975974 21975992 18
Deletion Chr1 21983001 22403000 419999 22
Deletion Chr5 24884035 24884044 9
Deletion Chr8 25598633 25598635 2
Deletion Chr2 28785334 28785345 11 OsKitaake02g289900
Deletion Chr2 33164238 33164245 7
Deletion Chr1 41128646 41128648 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 642505 642508 2
Insertion Chr1 3257045 3257047 1 OsKitaake01g042500
Insertion Chr9 1062519 1062522 2
Insertion Chr5 9695636 9695638 1 OsKitaake05g088800
Insertion Chr7 12248929 12248931 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 5941061 6188359 OsKitaake03g088800
Inversion Chr3 5942375 6188361 OsKitaake03g088800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14231075	C-T	Homo	INTERGENIC
SBS	Chr2	4831201	T-A	Hetero	INTERGENIC
SBS	Chr3	2931559	A-G	Hetero	INTRON
SBS	Chr3	9183421	C-A	Hetero	INTERGENIC
SBS	Chr3	10084966	C-T	Homo	UTR_5_PRIME
SBS	Chr3	16415326	A-G	Homo	INTERGENIC
SBS	Chr3	19170611	C-A	Homo	INTERGENIC
SBS	Chr3	25978477	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g274000
SBS	Chr3	27346089	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g282000
SBS	Chr5	1238559	T-A	Homo	INTERGENIC
SBS	Chr5	1520063	C-A	Homo	INTERGENIC
SBS	Chr5	4654288	G-A	Homo	INTERGENIC
SBS	Chr5	6393541	T-G	Homo	INTERGENIC
SBS	Chr5	8184497	A-G	Hetero	INTERGENIC
SBS	Chr5	13092321	G-T	Homo	INTERGENIC
SBS	Chr6	3228287	G-A	Homo	INTERGENIC
SBS	Chr6	15347347	A-G	Homo	INTERGENIC
SBS	Chr6	20383383	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	1136746	A-G	Hetero	INTERGENIC
SBS	Chr7	11044077	T-A	Homo	INTERGENIC
SBS	Chr7	22076870	G-A	Hetero	INTERGENIC
SBS	Chr8	3314032	T-G	Hetero	STOP_GAINED	OsKitaake08g037000
SBS	Chr9	1046941	T-G	Homo	INTERGENIC
SBS	Chr9	10217541	A-G	Hetero	INTERGENIC
SBS	Chr9	10226919	A-C	Hetero	INTERGENIC
SBS	Chr9	11734395	T-C	Hetero	INTRON
SBS	Chr9	15512768	C-T	Hetero	INTERGENIC
SBS	Chr11	3317739	A-T	Homo	INTRON
SBS	Chr11	6742322	G-T	Hetero	INTERGENIC
SBS	Chr11	9043905	C-G	Hetero	INTERGENIC
SBS	Chr11	13155872	G-A	Hetero	INTRON
SBS	Chr11	13206365	C-A	Hetero	INTERGENIC
SBS	Chr11	13919519	T-A	Hetero	INTERGENIC
SBS	Chr11	17390570	C-A	Hetero	INTERGENIC
SBS	Chr12	4078810	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g055500
SBS	Chr12	11299789	G-A	Hetero	INTERGENIC
SBS	Chr12	23627918	G-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4071009	4071028	19
Deletion	Chr6	4595127	4595137	10
Deletion	Chr5	7467087	7467091	4
Deletion	Chr8	9901196	9901198	2
Deletion	Chr5	10928001	10937000	8999
Deletion	Chr2	11727041	11727055	14
Deletion	Chr8	16030001	16093000	62999	4
Deletion	Chr8	16097001	16113000	15999	2
Deletion	Chr11	16362392	16362395	3
Deletion	Chr10	17082604	17082607	3
Deletion	Chr1	17878114	17878118	4
Deletion	Chr6	17963678	17963679	1
Deletion	Chr5	20094210	20094211	1
Deletion	Chr2	21492735	21492737	2
Deletion	Chr1	21975974	21975992	18
Deletion	Chr1	21983001	22403000	419999	22
Deletion	Chr5	24884035	24884044	9
Deletion	Chr8	25598633	25598635	2
Deletion	Chr2	28785334	28785345	11	OsKitaake02g289900
Deletion	Chr2	33164238	33164245	7
Deletion	Chr1	41128646	41128648	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5941061	6188359	OsKitaake03g088800
Inversion	Chr3	5942375	6188361	OsKitaake03g088800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes