Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1205-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1205-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4061676 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 4102993 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 11949538 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 12198911 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18744237 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 32541102 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 2742756 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 3971073 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 33618870 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 6144247 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 13888508 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 15759736 | A-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 15759737 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 3137597 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 7293041 | A-C | Homo | INTRON | |
| SBS | Chr5 | 19386867 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 25509506 | T-G | Hetero | INTRON | |
| SBS | Chr6 | 15996646 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 23392480 | C-T | Homo | INTRON | |
| SBS | Chr9 | 8974967 | G-A | Homo | INTRON | |
| SBS | Chr9 | 20921468 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 3499021 | A-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 5047350 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 21114123 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9547418 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 252881 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 22187827 | G-T | Hetero | UTR_3_PRIME |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 677463 | 677464 | 1 | |
| Deletion | Chr9 | 4165335 | 4165340 | 5 | |
| Deletion | Chr8 | 10806835 | 10806909 | 74 | |
| Deletion | Chr4 | 11721632 | 11721634 | 2 | |
| Deletion | Chr11 | 11752373 | 11752385 | 12 | |
| Deletion | Chr9 | 12285234 | 12285235 | 1 | |
| Deletion | Chr6 | 25891258 | 25891264 | 6 | |
| Deletion | Chr2 | 28403643 | 28403653 | 10 | |
| Deletion | Chr3 | 34371536 | 34371540 | 4 | OsKitaake03g372900 |
| Deletion | Chr3 | 35995375 | 35995381 | 6 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 446 | 448 | 1 | |
| Insertion | Chr6 | 7838 | 7840 | 1 | |
| Insertion | Chr7 | 22848895 | 22848898 | 2 |