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Mutant Information

Mutant Name	FN1209-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1209-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2019581 T-A Hetero INTRON
SBS Chr1 38787076 G-T Homo UTR_5_PRIME
SBS Chr1 38787077 C-T Homo UTR_5_PRIME
SBS Chr2 4579069 G-A Hetero INTERGENIC
SBS Chr2 14043703 G-A Hetero INTERGENIC
SBS Chr3 116059 A-G Hetero UTR_5_PRIME
SBS Chr3 459189 G-A Hetero INTERGENIC
SBS Chr3 24223643 A-T Homo INTERGENIC
SBS Chr4 4920295 G-A Hetero INTERGENIC
SBS Chr4 5087977 C-T Hetero INTRON
SBS Chr4 5087978 A-T Hetero INTRON
SBS Chr4 10107711 G-A Homo INTERGENIC
SBS Chr4 10789465 G-A Homo INTERGENIC
SBS Chr4 34459984 G-A Hetero INTERGENIC
SBS Chr6 2366413 C-A Hetero INTRON
SBS Chr6 23789063 G-A Hetero INTRON
SBS Chr7 2917787 G-A Hetero INTERGENIC
SBS Chr7 5793246 A-T Hetero INTERGENIC
SBS Chr7 15869422 G-T Homo INTRON
SBS Chr7 23460195 T-A Hetero UTR_3_PRIME
SBS Chr7 25105781 G-T Hetero INTERGENIC
SBS Chr8 23063367 T-A Hetero INTERGENIC
SBS Chr10 4879919 G-C Homo INTERGENIC
SBS Chr10 16425204 G-A Hetero UTR_5_PRIME
SBS Chr10 21490940 G-A Homo INTERGENIC
SBS Chr11 518538 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g005700
SBS Chr11 526285 T-A Hetero INTERGENIC
SBS Chr12 5840477 C-T Hetero INTERGENIC
SBS Chr12 16787865 T-G Hetero INTERGENIC
SBS Chr12 16846784 G-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3738685 3738698 13 OsKitaake03g052300
Deletion Chr7 7069809 7069811 2
Deletion Chr4 8447642 8447643 1
Deletion Chr4 9778679 9778687 8
Deletion Chr4 11493531 11493532 1
Deletion Chr7 11806664 11806668 4
Deletion Chr7 12944258 12944264 6
Deletion Chr7 24181624 24181626 2
Deletion Chr6 25835800 25835806 6
Deletion Chr11 27640885 27640995 110
Deletion Chr3 29165290 29165292 2
Deletion Chr5 29561525 29561526 1
Deletion Chr1 31410934 31410940 6
Deletion Chr1 36649998 36650001 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6885482 6885485 2 OsKitaake03g097400

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 10364113 10852109 OsKitaake07g101100
Inversion Chr7 12777350 12798214
Inversion Chr7 12777354 12798215
Inversion Chr7 12905464 12942207 OsKitaake07g114300
Inversion Chr7 12905466 12942217 OsKitaake07g114300
Inversion Chr7 20284908 20806683 OsKitaake07g167000
Inversion Chr7 20284912 20806689 OsKitaake07g167000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 2360251 Chr5 27483729
Translocation Chr6 2366809 Chr5 27483770 OsKitaake06g030700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2019581	T-A	Hetero	INTRON
SBS	Chr1	38787076	G-T	Homo	UTR_5_PRIME
SBS	Chr1	38787077	C-T	Homo	UTR_5_PRIME
SBS	Chr2	4579069	G-A	Hetero	INTERGENIC
SBS	Chr2	14043703	G-A	Hetero	INTERGENIC
SBS	Chr3	116059	A-G	Hetero	UTR_5_PRIME
SBS	Chr3	459189	G-A	Hetero	INTERGENIC
SBS	Chr3	24223643	A-T	Homo	INTERGENIC
SBS	Chr4	4920295	G-A	Hetero	INTERGENIC
SBS	Chr4	5087977	C-T	Hetero	INTRON
SBS	Chr4	5087978	A-T	Hetero	INTRON
SBS	Chr4	10107711	G-A	Homo	INTERGENIC
SBS	Chr4	10789465	G-A	Homo	INTERGENIC
SBS	Chr4	34459984	G-A	Hetero	INTERGENIC
SBS	Chr6	2366413	C-A	Hetero	INTRON
SBS	Chr6	23789063	G-A	Hetero	INTRON
SBS	Chr7	2917787	G-A	Hetero	INTERGENIC
SBS	Chr7	5793246	A-T	Hetero	INTERGENIC
SBS	Chr7	15869422	G-T	Homo	INTRON
SBS	Chr7	23460195	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	25105781	G-T	Hetero	INTERGENIC
SBS	Chr8	23063367	T-A	Hetero	INTERGENIC
SBS	Chr10	4879919	G-C	Homo	INTERGENIC
SBS	Chr10	16425204	G-A	Hetero	UTR_5_PRIME
SBS	Chr10	21490940	G-A	Homo	INTERGENIC
SBS	Chr11	518538	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g005700
SBS	Chr11	526285	T-A	Hetero	INTERGENIC
SBS	Chr12	5840477	C-T	Hetero	INTERGENIC
SBS	Chr12	16787865	T-G	Hetero	INTERGENIC
SBS	Chr12	16846784	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3738685	3738698	13	OsKitaake03g052300
Deletion	Chr7	7069809	7069811	2
Deletion	Chr4	8447642	8447643	1
Deletion	Chr4	9778679	9778687	8
Deletion	Chr4	11493531	11493532	1
Deletion	Chr7	11806664	11806668	4
Deletion	Chr7	12944258	12944264	6
Deletion	Chr7	24181624	24181626	2
Deletion	Chr6	25835800	25835806	6
Deletion	Chr11	27640885	27640995	110
Deletion	Chr3	29165290	29165292	2
Deletion	Chr5	29561525	29561526	1
Deletion	Chr1	31410934	31410940	6
Deletion	Chr1	36649998	36650001	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	10364113	10852109	OsKitaake07g101100
Inversion	Chr7	12777350	12798214
Inversion	Chr7	12777354	12798215
Inversion	Chr7	12905464	12942207	OsKitaake07g114300
Inversion	Chr7	12905466	12942217	OsKitaake07g114300
Inversion	Chr7	20284908	20806683	OsKitaake07g167000
Inversion	Chr7	20284912	20806689	OsKitaake07g167000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes