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Mutant Information |
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Mutant Name | FN1210-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1210-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 7614528 | C-T | Homo | INTERGENIC | |
SBS | Chr1 | 11508142 | C-A | Hetero | INTERGENIC | |
SBS | Chr1 | 39059712 | C-T | Hetero | SYNONYMOUS_CODING | |
SBS | Chr2 | 5762409 | C-A | Hetero | INTERGENIC | |
SBS | Chr2 | 17799944 | C-T | Homo | INTERGENIC | |
SBS | Chr3 | 21583984 | G-T | Hetero | INTERGENIC | |
SBS | Chr3 | 28428077 | C-G | Homo | UTR_5_PRIME | |
SBS | Chr4 | 5392719 | C-G | Homo | INTERGENIC | |
SBS | Chr4 | 9405897 | G-A | Homo | INTERGENIC | |
SBS | Chr4 | 27103828 | A-T | Homo | INTERGENIC | |
SBS | Chr5 | 5686947 | G-C | Hetero | UTR_5_PRIME | |
SBS | Chr9 | 12049987 | C-T | Homo | INTERGENIC | |
SBS | Chr9 | 17834326 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g135500 |
SBS | Chr10 | 12528327 | C-T | Homo | INTERGENIC | |
SBS | Chr11 | 3021359 | T-G | Hetero | INTERGENIC | |
SBS | Chr11 | 23264544 | G-T | Homo | INTERGENIC | |
SBS | Chr11 | 23925850 | A-T | Homo | INTERGENIC | |
SBS | Chr11 | 28395606 | C-G | Hetero | INTERGENIC | |
SBS | Chr12 | 1435262 | A-G | Hetero | INTRON | |
SBS | Chr12 | 3663469 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 5460049 | G-A | Hetero | INTERGENIC | |
SBS | Chr12 | 16645364 | T-C | Homo | INTERGENIC | |
SBS | Chr12 | 24308140 | C-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr9 | 728429 | 728496 | 67 | |
Deletion | Chr9 | 5119535 | 5119545 | 10 | |
Deletion | Chr9 | 8133175 | 8133176 | 1 | |
Deletion | Chr11 | 9980373 | 9980378 | 5 | |
Deletion | Chr4 | 11609785 | 11609786 | 1 | |
Deletion | Chr5 | 13883899 | 13883901 | 2 | |
Deletion | Chr10 | 15490877 | 15490884 | 7 | |
Deletion | Chr11 | 15533250 | 15533252 | 2 | |
Deletion | Chr2 | 20982870 | 20982875 | 5 | OsKitaake02g202400 |
Deletion | Chr10 | 21967001 | 21998000 | 30999 | 4 |
Deletion | Chr1 | 35923240 | 35923242 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr3 | 36082270 | 36082273 | 2 | |
Insertion | Chr4 | 10143274 | 10143276 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr11 | 24299458 | 24390173 | |
Inversion | Chr11 | 24305538 | 24390152 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr6 | 15292172 | Chr5 | 8537082 | |
Translocation | Chr6 | 15440258 | Chr5 | 8536671 |