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Mutant Information

Mutant Name	FN1211-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1211-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12962535 C-T Homo INTERGENIC
SBS Chr1 14612167 G-A Hetero INTRON
SBS Chr1 19747816 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g196600
SBS Chr2 36304039 T-C Hetero INTERGENIC
SBS Chr3 9751080 T-C Homo SPLICE_SITE_REGION
SBS Chr4 2856198 C-T Hetero INTERGENIC
SBS Chr4 11707107 A-G Homo INTRON
SBS Chr4 18151047 C-G Homo INTERGENIC
SBS Chr5 9422526 G-A Hetero INTERGENIC
SBS Chr5 17167076 T-C Hetero INTERGENIC
SBS Chr5 17610603 T-C Hetero INTERGENIC
SBS Chr6 19489467 C-G Homo INTERGENIC
SBS Chr7 19165325 G-T Homo INTRON
SBS Chr7 19165327 A-T Homo INTRON
SBS Chr8 11606534 G-T Homo INTERGENIC
SBS Chr8 16481378 G-A Homo INTERGENIC
SBS Chr8 22182264 C-T Hetero INTERGENIC
SBS Chr8 22182267 A-T Hetero INTERGENIC
SBS Chr9 20519372 T-A Homo INTERGENIC
SBS Chr10 3071088 C-A Homo INTERGENIC
SBS Chr10 14143818 T-C Hetero INTERGENIC
SBS Chr11 25094130 T-C Homo INTERGENIC
SBS Chr12 19315818 C-G Homo INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 85068 85076 8
Deletion Chr12 1503614 1503615 1
Deletion Chr3 1678001 1690000 11999 OsKitaake03g023750
Deletion Chr6 3322403 3322406 3
Deletion Chr6 4192001 4202000 9999 OsKitaake06g058200
Deletion Chr12 4898035 4898036 1
Deletion Chr6 6611372 6611378 6
Deletion Chr8 10709283 10709285 2
Deletion Chr2 11190391 11190392 1
Deletion Chr5 11527814 11527816 2
Deletion Chr8 11646001 11668000 21999 OsKitaake08g102500
Deletion Chr11 13856450 13856467 17
Deletion Chr11 14354177 14354186 9
Deletion Chr1 14618721 14618722 1 OsKitaake01g165900
Deletion Chr4 18143309 18143311 2
Deletion Chr9 19175404 19175411 7 OsKitaake09g154100
Deletion Chr9 20933640 20933646 6 OsKitaake09g179000
Deletion Chr5 22470350 22470351 1
Deletion Chr11 25435469 25435470 1
Deletion Chr6 25693979 25693992 13
Deletion Chr8 26425533 26425534 1 OsKitaake08g211700
Deletion Chr4 27662001 27674000 11999 OsKitaake04g203600
Deletion Chr3 27998001 28009000 10999
Deletion Chr5 29212866 29212871 5
Deletion Chr1 31021001 31058000 36999 8
Deletion Chr1 36594654 36594663 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 29077620 29077624 3
Insertion Chr10 16897598 16897601 2
Insertion Chr12 6367992 6367994 1
Insertion Chr12 12778408 12778411 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 16106727 16229735
Inversion Chr10 16106729 16229734

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12962535	C-T	Homo	INTERGENIC
SBS	Chr1	14612167	G-A	Hetero	INTRON
SBS	Chr1	19747816	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g196600
SBS	Chr2	36304039	T-C	Hetero	INTERGENIC
SBS	Chr3	9751080	T-C	Homo	SPLICE_SITE_REGION
SBS	Chr4	2856198	C-T	Hetero	INTERGENIC
SBS	Chr4	11707107	A-G	Homo	INTRON
SBS	Chr4	18151047	C-G	Homo	INTERGENIC
SBS	Chr5	9422526	G-A	Hetero	INTERGENIC
SBS	Chr5	17167076	T-C	Hetero	INTERGENIC
SBS	Chr5	17610603	T-C	Hetero	INTERGENIC
SBS	Chr6	19489467	C-G	Homo	INTERGENIC
SBS	Chr7	19165325	G-T	Homo	INTRON
SBS	Chr7	19165327	A-T	Homo	INTRON
SBS	Chr8	11606534	G-T	Homo	INTERGENIC
SBS	Chr8	16481378	G-A	Homo	INTERGENIC
SBS	Chr8	22182264	C-T	Hetero	INTERGENIC
SBS	Chr8	22182267	A-T	Hetero	INTERGENIC
SBS	Chr9	20519372	T-A	Homo	INTERGENIC
SBS	Chr10	3071088	C-A	Homo	INTERGENIC
SBS	Chr10	14143818	T-C	Hetero	INTERGENIC
SBS	Chr11	25094130	T-C	Homo	INTERGENIC
SBS	Chr12	19315818	C-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	85068	85076	8
Deletion	Chr12	1503614	1503615	1
Deletion	Chr3	1678001	1690000	11999	OsKitaake03g023750
Deletion	Chr6	3322403	3322406	3
Deletion	Chr6	4192001	4202000	9999	OsKitaake06g058200
Deletion	Chr12	4898035	4898036	1
Deletion	Chr6	6611372	6611378	6
Deletion	Chr8	10709283	10709285	2
Deletion	Chr2	11190391	11190392	1
Deletion	Chr5	11527814	11527816	2
Deletion	Chr8	11646001	11668000	21999	OsKitaake08g102500
Deletion	Chr11	13856450	13856467	17
Deletion	Chr11	14354177	14354186	9
Deletion	Chr1	14618721	14618722	1	OsKitaake01g165900
Deletion	Chr4	18143309	18143311	2
Deletion	Chr9	19175404	19175411	7	OsKitaake09g154100
Deletion	Chr9	20933640	20933646	6	OsKitaake09g179000
Deletion	Chr5	22470350	22470351	1
Deletion	Chr11	25435469	25435470	1
Deletion	Chr6	25693979	25693992	13
Deletion	Chr8	26425533	26425534	1	OsKitaake08g211700
Deletion	Chr4	27662001	27674000	11999	OsKitaake04g203600
Deletion	Chr3	27998001	28009000	10999
Deletion	Chr5	29212866	29212871	5
Deletion	Chr1	31021001	31058000	36999	8
Deletion	Chr1	36594654	36594663	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	16106727	16229735
Inversion	Chr10	16106729	16229734

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes