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Mutant Information

Mutant Name	FN1212-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1212-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2503500 T-A Hetero INTERGENIC
SBS Chr1 5775792 T-C Hetero INTERGENIC
SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr1 23995671 G-A Homo INTERGENIC
SBS Chr1 30891851 T-A Homo INTERGENIC
SBS Chr2 3965110 T-C Hetero INTERGENIC
SBS Chr3 2042048 T-G Hetero INTERGENIC
SBS Chr3 7347599 C-T Hetero INTERGENIC
SBS Chr3 20594209 G-A Homo INTERGENIC
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr4 2335963 G-A Homo INTERGENIC
SBS Chr4 4800951 G-A Homo INTERGENIC
SBS Chr4 10779273 C-A Homo INTERGENIC
SBS Chr5 2169463 T-A Hetero INTERGENIC
SBS Chr5 9719386 T-G Hetero INTERGENIC
SBS Chr5 19525028 T-G Hetero INTERGENIC
SBS Chr5 21311627 T-G Hetero INTERGENIC
SBS Chr6 5990979 G-C Homo INTERGENIC
SBS Chr6 10323935 A-T Homo INTERGENIC
SBS Chr6 17861871 A-T Homo INTERGENIC
SBS Chr6 28904439 C-T Homo INTERGENIC
SBS Chr7 17240192 C-T Hetero UTR_5_PRIME
SBS Chr7 17240193 C-T Hetero UTR_5_PRIME
SBS Chr7 17240194 C-T Hetero START_GAINED
SBS Chr8 3676111 G-A Hetero INTERGENIC
SBS Chr8 13958199 A-G Hetero UTR_3_PRIME
SBS Chr8 21136289 G-A Homo INTERGENIC
SBS Chr8 21136290 G-A Homo INTERGENIC
SBS Chr8 23037799 C-T Hetero INTERGENIC
SBS Chr8 26198534 T-C Hetero INTERGENIC
SBS Chr9 4141165 C-T Hetero INTERGENIC
SBS Chr9 13580714 G-A Hetero INTERGENIC
SBS Chr9 21216430 G-A Homo INTERGENIC
SBS Chr11 3025149 A-C Homo INTERGENIC
SBS Chr11 7624368 G-T Homo INTERGENIC
SBS Chr11 13556346 C-G Hetero INTERGENIC
SBS Chr11 28917231 G-A Hetero INTERGENIC
SBS Chr12 1596929 G-A Hetero INTERGENIC
SBS Chr12 3173229 G-A Hetero INTERGENIC
SBS Chr12 17323142 A-T Hetero INTERGENIC
SBS Chr12 26081783 T-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 169192 169199 7
Deletion Chr12 833102 833106 4
Deletion Chr12 920740 920750 10 OsKitaake12g013400
Deletion Chr10 1700247 1700249 2 OsKitaake10g011900
Deletion Chr8 2939001 3018000 78999 14
Deletion Chr6 4510338 4510339 1
Deletion Chr5 12129753 12129759 6
Deletion Chr10 15272129 15272132 3
Deletion Chr2 17833028 17833033 5
Deletion Chr7 18906381 18906383 2
Deletion Chr5 20424001 20485000 60999 2
Deletion Chr8 24125895 24125897 2
Deletion Chr2 27071034 27071043 9 OsKitaake02g270300
Deletion Chr6 28718632 28718633 1
Deletion Chr2 32245883 32245895 12
Deletion Chr4 32708100 32708106 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18175999 18176002 2
Insertion Chr7 4649935 4649938 2
Insertion Chr10 1809893 1809896 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 9839242 10484037 OsKitaake09g065400
Inversion Chr9 9839245 10484032 OsKitaake09g065400
Inversion Chr4 10504378 11087917
Inversion Chr5 28052260 28689540 OsKitaake05g259100
Inversion Chr5 28549822 28689534 OsKitaake05g266700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 8272671 Chr4 10504360
Translocation Chr5 20484973 Chr4 11087853

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2503500	T-A	Hetero	INTERGENIC
SBS	Chr1	5775792	T-C	Hetero	INTERGENIC
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr1	23995671	G-A	Homo	INTERGENIC
SBS	Chr1	30891851	T-A	Homo	INTERGENIC
SBS	Chr2	3965110	T-C	Hetero	INTERGENIC
SBS	Chr3	2042048	T-G	Hetero	INTERGENIC
SBS	Chr3	7347599	C-T	Hetero	INTERGENIC
SBS	Chr3	20594209	G-A	Homo	INTERGENIC
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr4	2335963	G-A	Homo	INTERGENIC
SBS	Chr4	4800951	G-A	Homo	INTERGENIC
SBS	Chr4	10779273	C-A	Homo	INTERGENIC
SBS	Chr5	2169463	T-A	Hetero	INTERGENIC
SBS	Chr5	9719386	T-G	Hetero	INTERGENIC
SBS	Chr5	19525028	T-G	Hetero	INTERGENIC
SBS	Chr5	21311627	T-G	Hetero	INTERGENIC
SBS	Chr6	5990979	G-C	Homo	INTERGENIC
SBS	Chr6	10323935	A-T	Homo	INTERGENIC
SBS	Chr6	17861871	A-T	Homo	INTERGENIC
SBS	Chr6	28904439	C-T	Homo	INTERGENIC
SBS	Chr7	17240192	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	17240193	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	17240194	C-T	Hetero	START_GAINED
SBS	Chr8	3676111	G-A	Hetero	INTERGENIC
SBS	Chr8	13958199	A-G	Hetero	UTR_3_PRIME
SBS	Chr8	21136289	G-A	Homo	INTERGENIC
SBS	Chr8	21136290	G-A	Homo	INTERGENIC
SBS	Chr8	23037799	C-T	Hetero	INTERGENIC
SBS	Chr8	26198534	T-C	Hetero	INTERGENIC
SBS	Chr9	4141165	C-T	Hetero	INTERGENIC
SBS	Chr9	13580714	G-A	Hetero	INTERGENIC
SBS	Chr9	21216430	G-A	Homo	INTERGENIC
SBS	Chr11	3025149	A-C	Homo	INTERGENIC
SBS	Chr11	7624368	G-T	Homo	INTERGENIC
SBS	Chr11	13556346	C-G	Hetero	INTERGENIC
SBS	Chr11	28917231	G-A	Hetero	INTERGENIC
SBS	Chr12	1596929	G-A	Hetero	INTERGENIC
SBS	Chr12	3173229	G-A	Hetero	INTERGENIC
SBS	Chr12	17323142	A-T	Hetero	INTERGENIC
SBS	Chr12	26081783	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	169192	169199	7
Deletion	Chr12	833102	833106	4
Deletion	Chr12	920740	920750	10	OsKitaake12g013400
Deletion	Chr10	1700247	1700249	2	OsKitaake10g011900
Deletion	Chr8	2939001	3018000	78999	14
Deletion	Chr6	4510338	4510339	1
Deletion	Chr5	12129753	12129759	6
Deletion	Chr10	15272129	15272132	3
Deletion	Chr2	17833028	17833033	5
Deletion	Chr7	18906381	18906383	2
Deletion	Chr5	20424001	20485000	60999	2
Deletion	Chr8	24125895	24125897	2
Deletion	Chr2	27071034	27071043	9	OsKitaake02g270300
Deletion	Chr6	28718632	28718633	1
Deletion	Chr2	32245883	32245895	12
Deletion	Chr4	32708100	32708106	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	9839242	10484037	OsKitaake09g065400
Inversion	Chr9	9839245	10484032	OsKitaake09g065400
Inversion	Chr4	10504378	11087917
Inversion	Chr5	28052260	28689540	OsKitaake05g259100
Inversion	Chr5	28549822	28689534	OsKitaake05g266700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes