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| Mutant Information |
|---|
| Mutant Name | FN1213-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1213-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1885807 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 3473667 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 7397871 | A-T | Homo | UTR_5_PRIME | |
| SBS | Chr1 | 10613080 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 12877995 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 15995683 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 29521878 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 30268691 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr1 | 30486959 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 35267966 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 8210397 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 9995332 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 15295744 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 33756387 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31436033 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 220207 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 7693990 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 22133905 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 29832448 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 13189431 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 14722625 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 30892840 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 30892842 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 26709105 | A-G | Homo | INTERGENIC | |
| SBS | Chr7 | 27675797 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g258400 |
| SBS | Chr8 | 880280 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 2569562 | A-C | Homo | INTERGENIC | |
| SBS | Chr8 | 5904344 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4983121 | A-G | Hetero | INTRON | |
| SBS | Chr9 | 8025315 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 12772547 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 9938456 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 9938457 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 13378414 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 11411496 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12221582 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 14580614 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14045930 | T-C | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 2356888 | 2356896 | 8 | |
| Deletion | Chr12 | 3576433 | 3576439 | 6 | |
| Deletion | Chr3 | 5381968 | 5381973 | 5 | |
| Deletion | Chr11 | 6167510 | 6167511 | 1 | |
| Deletion | Chr5 | 9067001 | 9157000 | 89999 | 8 |
| Deletion | Chr8 | 9620663 | 9620672 | 9 | |
| Deletion | Chr1 | 14486375 | 14486382 | 7 | |
| Deletion | Chr12 | 22219540 | 22219542 | 2 | |
| Deletion | Chr4 | 22249363 | 22249366 | 3 | |
| Deletion | Chr10 | 23271903 | 23271904 | 1 | |
| Deletion | Chr6 | 23368146 | 23368147 | 1 | |
| Deletion | Chr1 | 28810475 | 28810476 | 1 | |
| Deletion | Chr3 | 30067490 | 30067493 | 3 | |
| Deletion | Chr2 | 36321774 | 36321777 | 3 | OsKitaake02g384500 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 15883773 | 15883776 | 2 | |
| Insertion | Chr8 | 26682322 | 26682325 | 2 | |
| Insertion | Chr12 | 12827343 | 12827346 | 2 | |
| Insertion | Chr2 | 6961503 | 6961505 | 1 |