Search Kitaake

Mutant Information

Mutant Name	FN1214-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1214-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1078043 G-T Hetero INTERGENIC
SBS Chr1 6414067 C-A Homo INTERGENIC
SBS Chr1 24182231 T-G Hetero INTERGENIC
SBS Chr1 24182232 T-C Hetero INTERGENIC
SBS Chr2 4374656 G-T Hetero INTERGENIC
SBS Chr2 6121260 A-T Hetero INTERGENIC
SBS Chr2 18311903 G-A Homo INTERGENIC
SBS Chr2 18410482 T-C Homo INTERGENIC
SBS Chr3 17200956 G-T Homo NON_SYNONYMOUS_CODING OsKitaake03g213000
SBS Chr3 30083715 G-A Homo INTERGENIC
SBS Chr4 25735264 T-G Homo SYNONYMOUS_CODING
SBS Chr4 25735265 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g178800
SBS Chr4 26511329 T-C Homo INTERGENIC
SBS Chr5 29856455 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g285800
SBS Chr5 29856457 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g285800
SBS Chr6 16765654 A-T Hetero UTR_3_PRIME
SBS Chr6 16765655 C-T Hetero UTR_3_PRIME
SBS Chr7 10883286 C-T Hetero INTERGENIC
SBS Chr8 23392480 C-T Homo INTRON
SBS Chr9 478527 G-C Hetero INTERGENIC
SBS Chr9 14163981 T-C Hetero INTERGENIC
SBS Chr10 4346241 C-T Hetero INTERGENIC
SBS Chr11 3747936 G-T Hetero UTR_3_PRIME
SBS Chr11 4988077 G-A Hetero INTERGENIC
SBS Chr11 21944695 C-T Hetero INTERGENIC
SBS Chr11 27670125 C-A Hetero INTERGENIC
SBS Chr12 16761424 C-T Homo INTERGENIC
SBS Chr12 18600323 C-G Homo INTERGENIC
SBS Chr12 23932554 G-A Hetero INTERGENIC
SBS Chr12 26256552 C-T Hetero SYNONYMOUS_CODING

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1553196 1553263 67
Deletion Chr11 4360084 4360086 2
Deletion Chr9 4816464 4816467 3
Deletion Chr6 12168400 12168413 13
Deletion Chr4 15426001 15458000 31999 4
Deletion Chr6 16377655 16377657 2
Deletion Chr7 20700810 20700825 15
Deletion Chr5 23442429 23442430 1 OsKitaake05g196400
Deletion Chr4 26511290 26511291 1
Deletion Chr3 26759917 26759921 4
Deletion Chr2 27440441 27440446 5
Deletion Chr6 29437545 29437547 2
Deletion Chr4 32267252 32267255 3
Deletion Chr1 36458422 36458434 12
Deletion Chr1 36638726 36638727 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 23342413 23342416 2
Insertion Chr7 2208107 2208110 2
Insertion Chr11 8646050 8646053 2
Insertion Chr11 18576873 18576876 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 6124173 6680391
Inversion Chr7 6124197 6680392
Inversion Chr1 40845945 41135760 OsKitaake01g449000
Inversion Chr1 40845969 41135764 OsKitaake01g449000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1078043	G-T	Hetero	INTERGENIC
SBS	Chr1	6414067	C-A	Homo	INTERGENIC
SBS	Chr1	24182231	T-G	Hetero	INTERGENIC
SBS	Chr1	24182232	T-C	Hetero	INTERGENIC
SBS	Chr2	4374656	G-T	Hetero	INTERGENIC
SBS	Chr2	6121260	A-T	Hetero	INTERGENIC
SBS	Chr2	18311903	G-A	Homo	INTERGENIC
SBS	Chr2	18410482	T-C	Homo	INTERGENIC
SBS	Chr3	17200956	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g213000
SBS	Chr3	30083715	G-A	Homo	INTERGENIC
SBS	Chr4	25735264	T-G	Homo	SYNONYMOUS_CODING
SBS	Chr4	25735265	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g178800
SBS	Chr4	26511329	T-C	Homo	INTERGENIC
SBS	Chr5	29856455	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g285800
SBS	Chr5	29856457	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g285800
SBS	Chr6	16765654	A-T	Hetero	UTR_3_PRIME
SBS	Chr6	16765655	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	10883286	C-T	Hetero	INTERGENIC
SBS	Chr8	23392480	C-T	Homo	INTRON
SBS	Chr9	478527	G-C	Hetero	INTERGENIC
SBS	Chr9	14163981	T-C	Hetero	INTERGENIC
SBS	Chr10	4346241	C-T	Hetero	INTERGENIC
SBS	Chr11	3747936	G-T	Hetero	UTR_3_PRIME
SBS	Chr11	4988077	G-A	Hetero	INTERGENIC
SBS	Chr11	21944695	C-T	Hetero	INTERGENIC
SBS	Chr11	27670125	C-A	Hetero	INTERGENIC
SBS	Chr12	16761424	C-T	Homo	INTERGENIC
SBS	Chr12	18600323	C-G	Homo	INTERGENIC
SBS	Chr12	23932554	G-A	Hetero	INTERGENIC
SBS	Chr12	26256552	C-T	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1553196	1553263	67
Deletion	Chr11	4360084	4360086	2
Deletion	Chr9	4816464	4816467	3
Deletion	Chr6	12168400	12168413	13
Deletion	Chr4	15426001	15458000	31999	4
Deletion	Chr6	16377655	16377657	2
Deletion	Chr7	20700810	20700825	15
Deletion	Chr5	23442429	23442430	1	OsKitaake05g196400
Deletion	Chr4	26511290	26511291	1
Deletion	Chr3	26759917	26759921	4
Deletion	Chr2	27440441	27440446	5
Deletion	Chr6	29437545	29437547	2
Deletion	Chr4	32267252	32267255	3
Deletion	Chr1	36458422	36458434	12
Deletion	Chr1	36638726	36638727	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	6124173	6680391
Inversion	Chr7	6124197	6680392
Inversion	Chr1	40845945	41135760	OsKitaake01g449000
Inversion	Chr1	40845969	41135764	OsKitaake01g449000

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes