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Mutant Information

Mutant Name	FN1215-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1215-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3991521 G-A Hetero INTERGENIC
SBS Chr1 4887954 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g065300
SBS Chr1 9183819 A-C Hetero INTERGENIC
SBS Chr1 18115610 T-A Hetero UTR_3_PRIME
SBS Chr1 18240708 G-A Hetero INTERGENIC
SBS Chr1 21827767 T-C Hetero INTERGENIC
SBS Chr2 16024264 C-T Hetero INTERGENIC
SBS Chr2 31976560 A-T Homo INTERGENIC
SBS Chr3 25803494 C-T Hetero INTERGENIC
SBS Chr5 3946903 A-T Hetero INTRON
SBS Chr5 12123890 A-G Hetero INTERGENIC
SBS Chr5 14058909 C-A Hetero INTERGENIC
SBS Chr5 26635271 G-A Homo INTERGENIC
SBS Chr5 28201338 G-A Homo INTERGENIC
SBS Chr6 6612826 C-T Homo INTRON
SBS Chr6 14912305 G-A Homo INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr8 536295 C-T Hetero INTERGENIC
SBS Chr8 11420091 C-T Homo INTERGENIC
SBS Chr9 22135970 G-C Hetero INTERGENIC
SBS Chr10 99297 C-T Hetero INTERGENIC
SBS Chr10 4548752 C-T Homo INTERGENIC
SBS Chr10 10334141 C-T Homo INTERGENIC
SBS Chr10 15526304 T-C Homo INTERGENIC
SBS Chr12 17136217 C-T Hetero INTERGENIC
SBS Chr12 18218630 A-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 791686 791694 8
Deletion Chr5 1633001 1674000 40999 4
Deletion Chr2 3828801 3828814 13 OsKitaake02g055200
Deletion Chr7 4856575 4856576 1
Deletion Chr7 5656390 5656392 2
Deletion Chr5 10946001 11049000 102999 3
Deletion Chr3 13659259 13659260 1
Deletion Chr8 13787151 13787152 1
Deletion Chr7 15527056 15527065 9
Deletion Chr6 17847178 17847180 2
Deletion Chr8 20790035 20790036 1
Deletion Chr1 21417725 21417733 8
Deletion Chr2 21480434 21480440 6 OsKitaake02g207500
Deletion Chr2 28315095 28315108 13
Deletion Chr2 33595891 33595894 3
Deletion Chr2 35509979 35509981 2
Deletion Chr1 41233001 41247000 13999 2

Insertions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13943955 13943957 1
Insertion Chr1 27538497 27538500 2
Insertion Chr3 1726571 1726574 2
Insertion Chr5 29314832 29314835 2
Insertion Chr6 5483886 5483889 2
Insertion Chr6 30628772 30628775 2
Insertion Chr7 284523 284526 2
Insertion Chr7 21976534 21976537 2
Insertion Chr9 3057509 3057512 2
Insertion Chr11 26028631 26028634 2
Insertion Chr12 26792519 26792522 2
Insertion Chr2 25139969 25139971 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 30793983 30917582 OsKitaake06g291300
Inversion Chr6 30793989 30917621 OsKitaake06g291300

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5508726 Chr5 24149286 2
Translocation Chr5 11047510 Chr2 31628106 OsKitaake02g321880
Translocation Chr5 11347050 Chr2 31628093 OsKitaake02g321880

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3991521	G-A	Hetero	INTERGENIC
SBS	Chr1	4887954	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g065300
SBS	Chr1	9183819	A-C	Hetero	INTERGENIC
SBS	Chr1	18115610	T-A	Hetero	UTR_3_PRIME
SBS	Chr1	18240708	G-A	Hetero	INTERGENIC
SBS	Chr1	21827767	T-C	Hetero	INTERGENIC
SBS	Chr2	16024264	C-T	Hetero	INTERGENIC
SBS	Chr2	31976560	A-T	Homo	INTERGENIC
SBS	Chr3	25803494	C-T	Hetero	INTERGENIC
SBS	Chr5	3946903	A-T	Hetero	INTRON
SBS	Chr5	12123890	A-G	Hetero	INTERGENIC
SBS	Chr5	14058909	C-A	Hetero	INTERGENIC
SBS	Chr5	26635271	G-A	Homo	INTERGENIC
SBS	Chr5	28201338	G-A	Homo	INTERGENIC
SBS	Chr6	6612826	C-T	Homo	INTRON
SBS	Chr6	14912305	G-A	Homo	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr8	536295	C-T	Hetero	INTERGENIC
SBS	Chr8	11420091	C-T	Homo	INTERGENIC
SBS	Chr9	22135970	G-C	Hetero	INTERGENIC
SBS	Chr10	99297	C-T	Hetero	INTERGENIC
SBS	Chr10	4548752	C-T	Homo	INTERGENIC
SBS	Chr10	10334141	C-T	Homo	INTERGENIC
SBS	Chr10	15526304	T-C	Homo	INTERGENIC
SBS	Chr12	17136217	C-T	Hetero	INTERGENIC
SBS	Chr12	18218630	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	791686	791694	8
Deletion	Chr5	1633001	1674000	40999	4
Deletion	Chr2	3828801	3828814	13	OsKitaake02g055200
Deletion	Chr7	4856575	4856576	1
Deletion	Chr7	5656390	5656392	2
Deletion	Chr5	10946001	11049000	102999	3
Deletion	Chr3	13659259	13659260	1
Deletion	Chr8	13787151	13787152	1
Deletion	Chr7	15527056	15527065	9
Deletion	Chr6	17847178	17847180	2
Deletion	Chr8	20790035	20790036	1
Deletion	Chr1	21417725	21417733	8
Deletion	Chr2	21480434	21480440	6	OsKitaake02g207500
Deletion	Chr2	28315095	28315108	13
Deletion	Chr2	33595891	33595894	3
Deletion	Chr2	35509979	35509981	2
Deletion	Chr1	41233001	41247000	13999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	30793983	30917582	OsKitaake06g291300
Inversion	Chr6	30793989	30917621	OsKitaake06g291300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes