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Mutant Information

Mutant Name	FN1216-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1216-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8034760 T-A Hetero INTERGENIC
SBS Chr1 28926420 G-A Homo INTERGENIC
SBS Chr1 38465322 A-G Homo INTERGENIC
SBS Chr2 1581309 A-T Hetero UTR_3_PRIME
SBS Chr2 23014463 G-T Hetero INTERGENIC
SBS Chr3 921503 C-T Hetero INTERGENIC
SBS Chr3 9984660 A-C Homo INTERGENIC
SBS Chr3 18672941 C-A Homo INTERGENIC
SBS Chr4 5409930 T-A Homo INTERGENIC
SBS Chr4 8536651 A-G Hetero INTERGENIC
SBS Chr4 20970154 G-T Hetero INTERGENIC
SBS Chr4 35951786 T-A Homo INTERGENIC
SBS Chr6 22968742 C-A Hetero INTERGENIC
SBS Chr7 1354084 G-A Hetero INTERGENIC
SBS Chr7 8361907 C-T Homo INTERGENIC
SBS Chr7 13467835 A-C Homo INTERGENIC
SBS Chr7 26827295 T-C Hetero INTERGENIC
SBS Chr8 8810580 C-A Homo INTERGENIC
SBS Chr8 8970944 G-C Homo INTERGENIC
SBS Chr10 2863564 G-A Homo INTERGENIC
SBS Chr10 4280602 G-C Homo INTERGENIC
SBS Chr10 9045369 G-A Hetero INTERGENIC
SBS Chr10 12934959 T-C Hetero INTERGENIC
SBS Chr10 23054177 T-C Hetero INTERGENIC
SBS Chr11 19966896 G-T Hetero INTERGENIC
SBS Chr11 23952438 C-T Hetero INTERGENIC
SBS Chr11 27237422 G-A Hetero INTERGENIC
SBS Chr11 27237423 G-A Hetero INTERGENIC
SBS Chr11 28678452 G-A Homo INTERGENIC
SBS Chr12 7754287 C-A Homo INTERGENIC
SBS Chr12 12413230 G-T Homo INTERGENIC
SBS Chr12 21147008 C-A Hetero INTERGENIC
SBS Chr12 23417778 C-T Hetero INTERGENIC
SBS Chr12 26826734 C-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2084903 2084905 2
Deletion Chr7 2986175 2986199 24
Deletion Chr1 4766435 4766436 1
Deletion Chr3 4791134 4791136 2
Deletion Chr12 8235325 8235346 21
Deletion Chr9 8594001 8603000 8999 OsKitaake09g050900
Deletion Chr8 8827177 8827179 2 OsKitaake08g081100
Deletion Chr4 10335753 10335754 1
Deletion Chr4 14113001 14215000 101999 7
Deletion Chr1 15173454 15173458 4
Deletion Chr3 17322039 17322050 11
Deletion Chr8 20709464 20709465 1
Deletion Chr5 28057336 28057344 8
Deletion Chr2 33319251 33319252 1
Deletion Chr2 34073001 34078000 4999

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27082062 27082065 2
Insertion Chr1 27872045 27872048 2
Insertion Chr2 410347 410350 2
Insertion Chr2 28849671 28849673 1
Insertion Chr6 15924 15927 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7861710 8107084

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8583528 Chr4 14223602
Translocation Chr9 8584089 Chr4 15275079 OsKitaake04g073200
Translocation Chr4 14214785 Chr3 25179331 OsKitaake03g266600
Translocation Chr4 14223597 Chr3 25179335 OsKitaake03g266600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8034760	T-A	Hetero	INTERGENIC
SBS	Chr1	28926420	G-A	Homo	INTERGENIC
SBS	Chr1	38465322	A-G	Homo	INTERGENIC
SBS	Chr2	1581309	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	23014463	G-T	Hetero	INTERGENIC
SBS	Chr3	921503	C-T	Hetero	INTERGENIC
SBS	Chr3	9984660	A-C	Homo	INTERGENIC
SBS	Chr3	18672941	C-A	Homo	INTERGENIC
SBS	Chr4	5409930	T-A	Homo	INTERGENIC
SBS	Chr4	8536651	A-G	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Hetero	INTERGENIC
SBS	Chr4	35951786	T-A	Homo	INTERGENIC
SBS	Chr6	22968742	C-A	Hetero	INTERGENIC
SBS	Chr7	1354084	G-A	Hetero	INTERGENIC
SBS	Chr7	8361907	C-T	Homo	INTERGENIC
SBS	Chr7	13467835	A-C	Homo	INTERGENIC
SBS	Chr7	26827295	T-C	Hetero	INTERGENIC
SBS	Chr8	8810580	C-A	Homo	INTERGENIC
SBS	Chr8	8970944	G-C	Homo	INTERGENIC
SBS	Chr10	2863564	G-A	Homo	INTERGENIC
SBS	Chr10	4280602	G-C	Homo	INTERGENIC
SBS	Chr10	9045369	G-A	Hetero	INTERGENIC
SBS	Chr10	12934959	T-C	Hetero	INTERGENIC
SBS	Chr10	23054177	T-C	Hetero	INTERGENIC
SBS	Chr11	19966896	G-T	Hetero	INTERGENIC
SBS	Chr11	23952438	C-T	Hetero	INTERGENIC
SBS	Chr11	27237422	G-A	Hetero	INTERGENIC
SBS	Chr11	27237423	G-A	Hetero	INTERGENIC
SBS	Chr11	28678452	G-A	Homo	INTERGENIC
SBS	Chr12	7754287	C-A	Homo	INTERGENIC
SBS	Chr12	12413230	G-T	Homo	INTERGENIC
SBS	Chr12	21147008	C-A	Hetero	INTERGENIC
SBS	Chr12	23417778	C-T	Hetero	INTERGENIC
SBS	Chr12	26826734	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2084903	2084905	2
Deletion	Chr7	2986175	2986199	24
Deletion	Chr1	4766435	4766436	1
Deletion	Chr3	4791134	4791136	2
Deletion	Chr12	8235325	8235346	21
Deletion	Chr9	8594001	8603000	8999	OsKitaake09g050900
Deletion	Chr8	8827177	8827179	2	OsKitaake08g081100
Deletion	Chr4	10335753	10335754	1
Deletion	Chr4	14113001	14215000	101999	7
Deletion	Chr1	15173454	15173458	4
Deletion	Chr3	17322039	17322050	11
Deletion	Chr8	20709464	20709465	1
Deletion	Chr5	28057336	28057344	8
Deletion	Chr2	33319251	33319252	1
Deletion	Chr2	34073001	34078000	4999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7861710	8107084

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes