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Mutant Information

Mutant Name	FN1217-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1217-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4609028 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g061900
SBS Chr1 4714757 T-C Hetero INTERGENIC
SBS Chr1 11859351 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g145900
SBS Chr1 14564942 C-A Homo SYNONYMOUS_CODING
SBS Chr1 16575755 T-C Homo UTR_5_PRIME
SBS Chr1 29197034 A-T Hetero INTERGENIC
SBS Chr1 31859135 G-T Hetero INTERGENIC
SBS Chr1 40129696 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g435500
SBS Chr2 4835120 G-C Homo INTERGENIC
SBS Chr2 10571217 G-C Hetero UTR_5_PRIME
SBS Chr2 18506261 G-T Hetero INTERGENIC
SBS Chr2 27009758 A-G Homo INTERGENIC
SBS Chr2 31487677 A-C Hetero INTERGENIC
SBS Chr2 35515272 T-C Homo INTERGENIC
SBS Chr2 35897441 T-C Homo INTRON
SBS Chr3 7942211 C-T Hetero INTERGENIC
SBS Chr3 9094404 G-A Hetero INTERGENIC
SBS Chr4 1453569 G-A Homo INTERGENIC
SBS Chr4 15604493 A-G Hetero INTERGENIC
SBS Chr5 322140 T-A Homo INTERGENIC
SBS Chr5 15482769 C-T Hetero INTERGENIC
SBS Chr6 1742099 G-A Hetero INTERGENIC
SBS Chr7 6420789 C-G Hetero INTERGENIC
SBS Chr7 8113674 C-T Homo INTERGENIC
SBS Chr7 27585481 T-A Homo INTRON
SBS Chr8 3127597 T-A Homo INTRON
SBS Chr8 7278545 C-A Homo INTERGENIC
SBS Chr8 13364338 C-T Hetero INTERGENIC
SBS Chr8 14747412 G-A Hetero INTERGENIC
SBS Chr8 17119247 A-T Hetero INTERGENIC
SBS Chr9 7193501 C-T Hetero INTERGENIC
SBS Chr9 9150157 G-A Hetero INTERGENIC
SBS Chr9 9205261 A-T Hetero SYNONYMOUS_CODING
SBS Chr10 14799906 G-T Hetero INTERGENIC
SBS Chr10 14799907 G-T Hetero INTERGENIC
SBS Chr11 8536273 C-G Hetero INTERGENIC
SBS Chr11 16031610 G-A Hetero INTERGENIC
SBS Chr11 16715173 G-T Hetero INTERGENIC
SBS Chr11 19090160 C-A Hetero INTERGENIC
SBS Chr11 19118141 A-T Hetero UTR_3_PRIME
SBS Chr11 21816010 C-T Homo INTERGENIC
SBS Chr11 22936897 T-C Homo INTERGENIC
SBS Chr11 28311539 A-G Homo INTERGENIC
SBS Chr12 1610351 C-G Hetero INTERGENIC
SBS Chr12 12992382 C-T Hetero INTERGENIC
SBS Chr12 16868400 G-A Hetero INTERGENIC
SBS Chr12 17556053 G-A Homo INTERGENIC
SBS Chr12 20690548 C-A Hetero INTERGENIC
SBS Chr12 21073625 G-A Hetero INTERGENIC
SBS Chr12 22484304 C-A Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 740986 740988 2
Deletion Chr1 3837573 3837578 5
Deletion Chr10 4199191 4199192 1
Deletion Chr5 7160689 7160691 2
Deletion Chr4 10515736 10515739 3
Deletion Chr7 11852952 11852955 3
Deletion Chr2 13231566 13231568 2
Deletion Chr12 17371764 17371775 11
Deletion Chr5 18012957 18012971 14
Deletion Chr2 18802607 18802612 5
Deletion Chr9 18971905 18971910 5
Deletion Chr1 19114875 19114878 3 OsKitaake01g191600
Deletion Chr11 20297154 20297163 9
Deletion Chr7 21948501 21948509 8
Deletion Chr9 22127595 22127600 5
Deletion Chr3 22467478 22467486 8
Deletion Chr3 22948605 22948607 2
Deletion Chr11 24794900 24794919 19
Deletion Chr6 27475929 27475941 12
Deletion Chr11 29113575 29113597 22
Deletion Chr1 32038482 32038486 4
Deletion Chr3 32971253 32971266 13 OsKitaake03g350500
Deletion Chr1 42154001 42216000 61999 15

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 4070341 4070344 2
Insertion Chr5 16272089 16272092 2
Insertion Chr9 14509920 14509923 2
Insertion Chr9 19668113 19668116 2
Insertion Chr5 2090480 2090482 1
Insertion Chr6 11349 11351 1
Insertion Chr11 6167908 6167910 1
Insertion Chr12 15941367 15941369 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 42155474 42917002 OsKitaake01g472600

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3020738 Chr6 7031456 2
Translocation Chr12 3021321 Chr6 7031457 2
Translocation Chr9 9134891 Chr3 16901326 OsKitaake03g211000
Translocation Chr11 25377836 Chr4 23201664 OsKitaake04g141600
Translocation Chr11 25377972 Chr4 23200147 OsKitaake04g141600
Translocation Chr11 26435532 Chr3 16901302 2
Translocation Chr11 26435539 Chr9 9134720 OsKitaake11g214950
Translocation Chr11 26435542 Chr3 16901326 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4609028	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g061900
SBS	Chr1	4714757	T-C	Hetero	INTERGENIC
SBS	Chr1	11859351	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g145900
SBS	Chr1	14564942	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	16575755	T-C	Homo	UTR_5_PRIME
SBS	Chr1	29197034	A-T	Hetero	INTERGENIC
SBS	Chr1	31859135	G-T	Hetero	INTERGENIC
SBS	Chr1	40129696	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g435500
SBS	Chr2	4835120	G-C	Homo	INTERGENIC
SBS	Chr2	10571217	G-C	Hetero	UTR_5_PRIME
SBS	Chr2	18506261	G-T	Hetero	INTERGENIC
SBS	Chr2	27009758	A-G	Homo	INTERGENIC
SBS	Chr2	31487677	A-C	Hetero	INTERGENIC
SBS	Chr2	35515272	T-C	Homo	INTERGENIC
SBS	Chr2	35897441	T-C	Homo	INTRON
SBS	Chr3	7942211	C-T	Hetero	INTERGENIC
SBS	Chr3	9094404	G-A	Hetero	INTERGENIC
SBS	Chr4	1453569	G-A	Homo	INTERGENIC
SBS	Chr4	15604493	A-G	Hetero	INTERGENIC
SBS	Chr5	322140	T-A	Homo	INTERGENIC
SBS	Chr5	15482769	C-T	Hetero	INTERGENIC
SBS	Chr6	1742099	G-A	Hetero	INTERGENIC
SBS	Chr7	6420789	C-G	Hetero	INTERGENIC
SBS	Chr7	8113674	C-T	Homo	INTERGENIC
SBS	Chr7	27585481	T-A	Homo	INTRON
SBS	Chr8	3127597	T-A	Homo	INTRON
SBS	Chr8	7278545	C-A	Homo	INTERGENIC
SBS	Chr8	13364338	C-T	Hetero	INTERGENIC
SBS	Chr8	14747412	G-A	Hetero	INTERGENIC
SBS	Chr8	17119247	A-T	Hetero	INTERGENIC
SBS	Chr9	7193501	C-T	Hetero	INTERGENIC
SBS	Chr9	9150157	G-A	Hetero	INTERGENIC
SBS	Chr9	9205261	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	14799906	G-T	Hetero	INTERGENIC
SBS	Chr10	14799907	G-T	Hetero	INTERGENIC
SBS	Chr11	8536273	C-G	Hetero	INTERGENIC
SBS	Chr11	16031610	G-A	Hetero	INTERGENIC
SBS	Chr11	16715173	G-T	Hetero	INTERGENIC
SBS	Chr11	19090160	C-A	Hetero	INTERGENIC
SBS	Chr11	19118141	A-T	Hetero	UTR_3_PRIME
SBS	Chr11	21816010	C-T	Homo	INTERGENIC
SBS	Chr11	22936897	T-C	Homo	INTERGENIC
SBS	Chr11	28311539	A-G	Homo	INTERGENIC
SBS	Chr12	1610351	C-G	Hetero	INTERGENIC
SBS	Chr12	12992382	C-T	Hetero	INTERGENIC
SBS	Chr12	16868400	G-A	Hetero	INTERGENIC
SBS	Chr12	17556053	G-A	Homo	INTERGENIC
SBS	Chr12	20690548	C-A	Hetero	INTERGENIC
SBS	Chr12	21073625	G-A	Hetero	INTERGENIC
SBS	Chr12	22484304	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	740986	740988	2
Deletion	Chr1	3837573	3837578	5
Deletion	Chr10	4199191	4199192	1
Deletion	Chr5	7160689	7160691	2
Deletion	Chr4	10515736	10515739	3
Deletion	Chr7	11852952	11852955	3
Deletion	Chr2	13231566	13231568	2
Deletion	Chr12	17371764	17371775	11
Deletion	Chr5	18012957	18012971	14
Deletion	Chr2	18802607	18802612	5
Deletion	Chr9	18971905	18971910	5
Deletion	Chr1	19114875	19114878	3	OsKitaake01g191600
Deletion	Chr11	20297154	20297163	9
Deletion	Chr7	21948501	21948509	8
Deletion	Chr9	22127595	22127600	5
Deletion	Chr3	22467478	22467486	8
Deletion	Chr3	22948605	22948607	2
Deletion	Chr11	24794900	24794919	19
Deletion	Chr6	27475929	27475941	12
Deletion	Chr11	29113575	29113597	22
Deletion	Chr1	32038482	32038486	4
Deletion	Chr3	32971253	32971266	13	OsKitaake03g350500
Deletion	Chr1	42154001	42216000	61999	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	42155474	42917002	OsKitaake01g472600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes