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| Mutant Information |
|---|
| Mutant Name | FN1219-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1219-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14662885 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 33538995 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 34611331 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 1862328 | C-G | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 7389322 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g098400 |
| SBS | Chr2 | 9530659 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 20031618 | T-A | Homo | INTRON | |
| SBS | Chr3 | 8744326 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 13588508 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18835342 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 34416244 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr4 | 20835353 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3486212 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 15194858 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 16360089 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2769810 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr6 | 7109392 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 27956208 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 128274 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g000600 |
| SBS | Chr7 | 4220200 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 17131448 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 24292012 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 13565171 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 16444077 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 1127419 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 2276039 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 3413336 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 12505811 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22983361 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g182600 |
| SBS | Chr12 | 103793 | A-G | Hetero | INTRON | |
| SBS | Chr12 | 2728625 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 9735308 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11057727 | T-G | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 2766971 | 2766978 | 7 | OsKitaake06g037800 |
| Deletion | Chr11 | 5918484 | 5918485 | 1 | |
| Deletion | Chr12 | 9071765 | 9071773 | 8 | |
| Deletion | Chr5 | 13828577 | 13828584 | 7 | |
| Deletion | Chr8 | 14393297 | 14393298 | 1 | |
| Deletion | Chr5 | 16360101 | 16360102 | 1 | |
| Deletion | Chr10 | 21678264 | 21678273 | 9 | |
| Deletion | Chr1 | 23320688 | 23320693 | 5 | |
| Deletion | Chr5 | 23578803 | 23578804 | 1 | |
| Deletion | Chr1 | 25405459 | 25405461 | 2 | |
| Deletion | Chr6 | 26805710 | 26805711 | 1 | OsKitaake06g240100 |
| Deletion | Chr2 | 27449687 | 27449695 | 8 | |
| Deletion | Chr4 | 33245349 | 33245355 | 6 | |
| Deletion | Chr2 | 33388913 | 33388916 | 3 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 14934976 | 14934979 | 2 | |
| Insertion | Chr5 | 318334 | 318337 | 2 | |
| Insertion | Chr11 | 18578308 | 18578311 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 29274178 | 29320296 | OsKitaake07g281200 |
| Inversion | Chr7 | 29294505 | 29320298 |
Translocations: 6
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 2309536 | Chr2 | 20777979 | OsKitaake02g201300 |
| Translocation | Chr3 | 2309544 | Chr2 | 20782517 | OsKitaake02g201300 |
| Translocation | Chr10 | 11682389 | Chr7 | 29294502 | |
| Translocation | Chr10 | 11683064 | Chr8 | 28446005 | 2 |
| Translocation | Chr8 | 28445999 | Chr7 | 29292742 | 2 |
| Translocation | Chr7 | 29292761 | Chr6 | 27592612 | OsKitaake07g281400 |