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Mutant Information

Mutant Name	FN1220-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1220-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 38230271 G-T Hetero INTERGENIC
SBS Chr1 41604862 G-A Homo INTERGENIC
SBS Chr2 2291378 G-A Homo INTERGENIC
SBS Chr2 12831415 G-C Hetero INTERGENIC
SBS Chr2 17795983 G-A Hetero INTERGENIC
SBS Chr2 29786305 C-T Homo INTERGENIC
SBS Chr3 10965137 C-A Homo INTERGENIC
SBS Chr3 29281127 C-T Homo UTR_3_PRIME
SBS Chr4 10151985 T-C Homo INTERGENIC
SBS Chr4 21313617 C-A Homo UTR_5_PRIME
SBS Chr4 23613685 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g148600
SBS Chr4 28441902 A-T Homo INTERGENIC
SBS Chr5 3808001 T-A Hetero INTERGENIC
SBS Chr5 6585614 T-C Hetero INTRON
SBS Chr5 18830900 G-A Hetero STOP_GAINED OsKitaake05g147000
SBS Chr5 24578946 C-A Homo INTRON
SBS Chr5 24753117 G-A Homo SYNONYMOUS_CODING
SBS Chr7 5261988 C-T Hetero INTERGENIC
SBS Chr7 16624233 G-T Hetero INTERGENIC
SBS Chr7 17188486 T-G Hetero INTERGENIC
SBS Chr7 18761557 C-T Hetero INTERGENIC
SBS Chr7 25602232 A-G Hetero INTERGENIC
SBS Chr7 26718303 G-A Hetero INTERGENIC
SBS Chr8 3290890 T-C Hetero INTERGENIC
SBS Chr8 12655215 T-G Hetero INTERGENIC
SBS Chr9 1805607 A-G Homo INTERGENIC
SBS Chr10 136759 G-A Homo INTERGENIC
SBS Chr10 20865395 C-A Homo INTRON
SBS Chr10 20865396 T-C Homo INTRON
SBS Chr10 23155543 T-A Homo INTRON
SBS Chr11 28863994 A-G Homo INTRON
SBS Chr12 5474523 T-A Homo INTRON

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 91246 91247 1
Deletion Chr12 10681517 10681518 1
Deletion Chr10 12125143 12125144 1
Deletion Chr1 23139208 23139209 1
Deletion Chr5 30030448 30030454 6
Deletion Chr2 30235779 30235782 3
Deletion Chr3 37343134 37343135 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 19257882 19257885 2
Insertion Chr6 10794752 10794754 1
Insertion Chr7 11984659 11984661 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 23816345 24361721 OsKitaake07g209600
Inversion Chr7 23817307 24361728 OsKitaake07g209700

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5815986 Chr1 38483978 OsKitaake12g070300
Translocation Chr12 5815999 Chr1 38498458 OsKitaake12g070300
Translocation Chr5 6145845 Chr2 32035952 2
Translocation Chr5 6145867 Chr2 32027895 2
Translocation Chr7 23816344 Chr1 38498744 OsKitaake07g209600
Translocation Chr7 23816347 Chr6 28281125 OsKitaake07g209600
Translocation Chr7 24361719 Chr1 38498462

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	38230271	G-T	Hetero	INTERGENIC
SBS	Chr1	41604862	G-A	Homo	INTERGENIC
SBS	Chr2	2291378	G-A	Homo	INTERGENIC
SBS	Chr2	12831415	G-C	Hetero	INTERGENIC
SBS	Chr2	17795983	G-A	Hetero	INTERGENIC
SBS	Chr2	29786305	C-T	Homo	INTERGENIC
SBS	Chr3	10965137	C-A	Homo	INTERGENIC
SBS	Chr3	29281127	C-T	Homo	UTR_3_PRIME
SBS	Chr4	10151985	T-C	Homo	INTERGENIC
SBS	Chr4	21313617	C-A	Homo	UTR_5_PRIME
SBS	Chr4	23613685	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g148600
SBS	Chr4	28441902	A-T	Homo	INTERGENIC
SBS	Chr5	3808001	T-A	Hetero	INTERGENIC
SBS	Chr5	6585614	T-C	Hetero	INTRON
SBS	Chr5	18830900	G-A	Hetero	STOP_GAINED	OsKitaake05g147000
SBS	Chr5	24578946	C-A	Homo	INTRON
SBS	Chr5	24753117	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	5261988	C-T	Hetero	INTERGENIC
SBS	Chr7	16624233	G-T	Hetero	INTERGENIC
SBS	Chr7	17188486	T-G	Hetero	INTERGENIC
SBS	Chr7	18761557	C-T	Hetero	INTERGENIC
SBS	Chr7	25602232	A-G	Hetero	INTERGENIC
SBS	Chr7	26718303	G-A	Hetero	INTERGENIC
SBS	Chr8	3290890	T-C	Hetero	INTERGENIC
SBS	Chr8	12655215	T-G	Hetero	INTERGENIC
SBS	Chr9	1805607	A-G	Homo	INTERGENIC
SBS	Chr10	136759	G-A	Homo	INTERGENIC
SBS	Chr10	20865395	C-A	Homo	INTRON
SBS	Chr10	20865396	T-C	Homo	INTRON
SBS	Chr10	23155543	T-A	Homo	INTRON
SBS	Chr11	28863994	A-G	Homo	INTRON
SBS	Chr12	5474523	T-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	91246	91247	1
Deletion	Chr12	10681517	10681518	1
Deletion	Chr10	12125143	12125144	1
Deletion	Chr1	23139208	23139209	1
Deletion	Chr5	30030448	30030454	6
Deletion	Chr2	30235779	30235782	3
Deletion	Chr3	37343134	37343135	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	23816345	24361721	OsKitaake07g209600
Inversion	Chr7	23817307	24361728	OsKitaake07g209700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes