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Mutant Information

Mutant Name	FN1221-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1221-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4319263 A-T Homo INTERGENIC
SBS Chr1 14803164 T-A Hetero INTERGENIC
SBS Chr1 40798780 A-C Homo INTERGENIC
SBS Chr2 4493685 T-G Homo INTERGENIC
SBS Chr2 20440428 G-A Hetero INTERGENIC
SBS Chr3 175514 T-C Hetero SPLICE_SITE_DONOR OsKitaake03g002600
SBS Chr3 705668 G-T Hetero INTERGENIC
SBS Chr3 705669 G-T Hetero INTERGENIC
SBS Chr3 6731673 T-A Hetero INTRON
SBS Chr3 6731674 C-T Hetero INTRON
SBS Chr3 20133771 T-C Hetero INTERGENIC
SBS Chr3 30375551 C-A Homo SYNONYMOUS_CODING
SBS Chr3 33929630 C-G Hetero INTERGENIC
SBS Chr4 4825393 A-G Hetero INTERGENIC
SBS Chr4 6536895 C-A Hetero INTERGENIC
SBS Chr5 6101886 C-A Hetero INTERGENIC
SBS Chr5 24294256 T-A Hetero INTERGENIC
SBS Chr5 25001754 A-T Hetero INTERGENIC
SBS Chr5 28241972 T-G Hetero INTRON
SBS Chr5 28422173 T-C Hetero INTERGENIC
SBS Chr6 6196882 C-T Hetero INTERGENIC
SBS Chr6 16021034 C-A Hetero INTRON
SBS Chr7 7980316 A-G Hetero INTERGENIC
SBS Chr7 9472463 A-C Hetero INTERGENIC
SBS Chr7 10409007 C-G Hetero INTERGENIC
SBS Chr7 17151553 C-T Hetero INTERGENIC
SBS Chr7 29658364 C-G Homo INTERGENIC
SBS Chr8 10877805 T-A Hetero INTRON
SBS Chr8 23499279 C-A Hetero INTERGENIC
SBS Chr9 16554830 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g120900
SBS Chr10 6605461 G-A Hetero INTERGENIC
SBS Chr10 11255992 A-G Hetero INTERGENIC
SBS Chr11 6908633 C-T Hetero INTRON
SBS Chr11 14987466 T-C Hetero INTERGENIC
SBS Chr11 16277325 C-T Hetero INTERGENIC
SBS Chr11 20651575 T-C Hetero INTRON
SBS Chr11 24435091 C-T Hetero INTERGENIC
SBS Chr12 1821622 A-T Hetero INTERGENIC
SBS Chr12 2146134 C-T Hetero INTERGENIC
SBS Chr12 12732397 G-A Homo INTERGENIC
SBS Chr12 19817501 C-T Hetero INTERGENIC
SBS Chr12 24507401 C-A Homo INTERGENIC
SBS Chr12 25020340 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 7001 231000 223999 13
Deletion Chr6 1732381 1732385 4
Deletion Chr8 10603253 10603256 3
Deletion Chr10 15865507 15865828 321 OsKitaake10g103600
Deletion Chr4 16034001 16047000 12999
Deletion Chr10 18485701 18485702 1 OsKitaake10g131100
Deletion Chr3 20701927 20701933 6
Deletion Chr1 21312645 21312648 3
Deletion Chr7 25293777 25293779 2
Deletion Chr1 25559001 25607000 47999 5
Deletion Chr6 26051089 26051105 16
Deletion Chr5 26887001 26903000 15999 3
Deletion Chr5 26912001 27052000 139999 16
Deletion Chr2 29268019 29268022 3
Deletion Chr4 35109138 35109139 1
Deletion Chr3 36001018 36001020 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26151787 26151790 2
Insertion Chr7 14486148 14486151 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 422971 671646 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 150209 Chr1 25555613 2
Translocation Chr3 422959 Chr1 25608400 2
Translocation Chr9 8427445 Chr4 18859248

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4319263	A-T	Homo	INTERGENIC
SBS	Chr1	14803164	T-A	Hetero	INTERGENIC
SBS	Chr1	40798780	A-C	Homo	INTERGENIC
SBS	Chr2	4493685	T-G	Homo	INTERGENIC
SBS	Chr2	20440428	G-A	Hetero	INTERGENIC
SBS	Chr3	175514	T-C	Hetero	SPLICE_SITE_DONOR	OsKitaake03g002600
SBS	Chr3	705668	G-T	Hetero	INTERGENIC
SBS	Chr3	705669	G-T	Hetero	INTERGENIC
SBS	Chr3	6731673	T-A	Hetero	INTRON
SBS	Chr3	6731674	C-T	Hetero	INTRON
SBS	Chr3	20133771	T-C	Hetero	INTERGENIC
SBS	Chr3	30375551	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	33929630	C-G	Hetero	INTERGENIC
SBS	Chr4	4825393	A-G	Hetero	INTERGENIC
SBS	Chr4	6536895	C-A	Hetero	INTERGENIC
SBS	Chr5	6101886	C-A	Hetero	INTERGENIC
SBS	Chr5	24294256	T-A	Hetero	INTERGENIC
SBS	Chr5	25001754	A-T	Hetero	INTERGENIC
SBS	Chr5	28241972	T-G	Hetero	INTRON
SBS	Chr5	28422173	T-C	Hetero	INTERGENIC
SBS	Chr6	6196882	C-T	Hetero	INTERGENIC
SBS	Chr6	16021034	C-A	Hetero	INTRON
SBS	Chr7	7980316	A-G	Hetero	INTERGENIC
SBS	Chr7	9472463	A-C	Hetero	INTERGENIC
SBS	Chr7	10409007	C-G	Hetero	INTERGENIC
SBS	Chr7	17151553	C-T	Hetero	INTERGENIC
SBS	Chr7	29658364	C-G	Homo	INTERGENIC
SBS	Chr8	10877805	T-A	Hetero	INTRON
SBS	Chr8	23499279	C-A	Hetero	INTERGENIC
SBS	Chr9	16554830	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g120900
SBS	Chr10	6605461	G-A	Hetero	INTERGENIC
SBS	Chr10	11255992	A-G	Hetero	INTERGENIC
SBS	Chr11	6908633	C-T	Hetero	INTRON
SBS	Chr11	14987466	T-C	Hetero	INTERGENIC
SBS	Chr11	16277325	C-T	Hetero	INTERGENIC
SBS	Chr11	20651575	T-C	Hetero	INTRON
SBS	Chr11	24435091	C-T	Hetero	INTERGENIC
SBS	Chr12	1821622	A-T	Hetero	INTERGENIC
SBS	Chr12	2146134	C-T	Hetero	INTERGENIC
SBS	Chr12	12732397	G-A	Homo	INTERGENIC
SBS	Chr12	19817501	C-T	Hetero	INTERGENIC
SBS	Chr12	24507401	C-A	Homo	INTERGENIC
SBS	Chr12	25020340	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	7001	231000	223999	13
Deletion	Chr6	1732381	1732385	4
Deletion	Chr8	10603253	10603256	3
Deletion	Chr10	15865507	15865828	321	OsKitaake10g103600
Deletion	Chr4	16034001	16047000	12999
Deletion	Chr10	18485701	18485702	1	OsKitaake10g131100
Deletion	Chr3	20701927	20701933	6
Deletion	Chr1	21312645	21312648	3
Deletion	Chr7	25293777	25293779	2
Deletion	Chr1	25559001	25607000	47999	5
Deletion	Chr6	26051089	26051105	16
Deletion	Chr5	26887001	26903000	15999	3
Deletion	Chr5	26912001	27052000	139999	16
Deletion	Chr2	29268019	29268022	3
Deletion	Chr4	35109138	35109139	1
Deletion	Chr3	36001018	36001020	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	422971	671646	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes