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Mutant Information

Mutant Name	FN1222-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1222-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 987329 C-T Hetero INTRON
SBS Chr1 11910948 C-T Hetero INTERGENIC
SBS Chr1 13983678 T-G Hetero INTERGENIC
SBS Chr2 12981406 A-G Hetero INTERGENIC
SBS Chr2 17484253 C-T Hetero INTERGENIC
SBS Chr2 18580668 C-G Hetero INTERGENIC
SBS Chr2 28286073 T-C Hetero START_GAINED
SBS Chr3 10054201 G-A Hetero INTERGENIC
SBS Chr3 32249121 G-T Hetero INTERGENIC
SBS Chr3 35180441 A-G Hetero INTERGENIC
SBS Chr3 35693058 G-A Hetero INTERGENIC
SBS Chr4 13466493 G-C Hetero INTERGENIC
SBS Chr4 32804363 T-C Homo INTERGENIC
SBS Chr5 4564486 G-A Hetero INTERGENIC
SBS Chr5 16392846 G-A Hetero INTERGENIC
SBS Chr6 12925039 C-T Homo INTERGENIC
SBS Chr6 15351799 A-T Homo INTERGENIC
SBS Chr6 15351800 A-T Homo INTERGENIC
SBS Chr6 18067073 T-A Homo INTERGENIC
SBS Chr7 13829533 C-G Homo INTERGENIC
SBS Chr9 2520299 G-A Hetero INTERGENIC
SBS Chr9 2899005 G-A Hetero INTERGENIC
SBS Chr9 4075038 G-A Hetero INTERGENIC
SBS Chr9 7796051 C-T Hetero INTERGENIC
SBS Chr9 13484492 C-G Homo INTERGENIC
SBS Chr10 20792312 G-A Homo INTERGENIC
SBS Chr11 4101303 C-T Hetero INTRON
SBS Chr11 4392751 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g058800
SBS Chr11 12403217 C-T Homo INTRON
SBS Chr11 17102711 C-T Homo INTERGENIC
SBS Chr12 15929486 G-C Hetero INTERGENIC
SBS Chr12 17793393 A-G Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 3256155 3256159 4
Deletion Chr1 6712245 6712249 4
Deletion Chr5 7007137 7007139 2
Deletion Chr8 7020590 7020595 5
Deletion Chr6 7196672 7196673 1 OsKitaake06g092800
Deletion Chr6 8572353 8572356 3
Deletion Chr10 8741470 8741481 11
Deletion Chr12 10772001 10779000 6999 OsKitaake12g100100
Deletion Chr12 12902317 12902324 7
Deletion Chr10 13916195 13916196 1
Deletion Chr4 16541001 16768000 226999 19
Deletion Chr3 17044001 17368000 323999 26
Deletion Chr11 17374771 17374776 5
Deletion Chr8 18692744 18692749 5
Deletion Chr6 20098250 20098317 67
Deletion Chr9 20260675 20260677 2
Deletion Chr8 20493886 20493904 18
Deletion Chr10 21967505 21967507 2
Deletion Chr11 27004305 27004309 4
Deletion Chr6 30465739 30465740 1 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 2535624 2535627 2
Insertion Chr2 18837125 18837127 1
Insertion Chr2 30412229 30412232 2
Insertion Chr7 15393591 15393594 2
Insertion Chr7 12248929 12248931 1
Insertion Chr12 11713778 11713780 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	987329	C-T	Hetero	INTRON
SBS	Chr1	11910948	C-T	Hetero	INTERGENIC
SBS	Chr1	13983678	T-G	Hetero	INTERGENIC
SBS	Chr2	12981406	A-G	Hetero	INTERGENIC
SBS	Chr2	17484253	C-T	Hetero	INTERGENIC
SBS	Chr2	18580668	C-G	Hetero	INTERGENIC
SBS	Chr2	28286073	T-C	Hetero	START_GAINED
SBS	Chr3	10054201	G-A	Hetero	INTERGENIC
SBS	Chr3	32249121	G-T	Hetero	INTERGENIC
SBS	Chr3	35180441	A-G	Hetero	INTERGENIC
SBS	Chr3	35693058	G-A	Hetero	INTERGENIC
SBS	Chr4	13466493	G-C	Hetero	INTERGENIC
SBS	Chr4	32804363	T-C	Homo	INTERGENIC
SBS	Chr5	4564486	G-A	Hetero	INTERGENIC
SBS	Chr5	16392846	G-A	Hetero	INTERGENIC
SBS	Chr6	12925039	C-T	Homo	INTERGENIC
SBS	Chr6	15351799	A-T	Homo	INTERGENIC
SBS	Chr6	15351800	A-T	Homo	INTERGENIC
SBS	Chr6	18067073	T-A	Homo	INTERGENIC
SBS	Chr7	13829533	C-G	Homo	INTERGENIC
SBS	Chr9	2520299	G-A	Hetero	INTERGENIC
SBS	Chr9	2899005	G-A	Hetero	INTERGENIC
SBS	Chr9	4075038	G-A	Hetero	INTERGENIC
SBS	Chr9	7796051	C-T	Hetero	INTERGENIC
SBS	Chr9	13484492	C-G	Homo	INTERGENIC
SBS	Chr10	20792312	G-A	Homo	INTERGENIC
SBS	Chr11	4101303	C-T	Hetero	INTRON
SBS	Chr11	4392751	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g058800
SBS	Chr11	12403217	C-T	Homo	INTRON
SBS	Chr11	17102711	C-T	Homo	INTERGENIC
SBS	Chr12	15929486	G-C	Hetero	INTERGENIC
SBS	Chr12	17793393	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	3256155	3256159	4
Deletion	Chr1	6712245	6712249	4
Deletion	Chr5	7007137	7007139	2
Deletion	Chr8	7020590	7020595	5
Deletion	Chr6	7196672	7196673	1	OsKitaake06g092800
Deletion	Chr6	8572353	8572356	3
Deletion	Chr10	8741470	8741481	11
Deletion	Chr12	10772001	10779000	6999	OsKitaake12g100100
Deletion	Chr12	12902317	12902324	7
Deletion	Chr10	13916195	13916196	1
Deletion	Chr4	16541001	16768000	226999	19
Deletion	Chr3	17044001	17368000	323999	26
Deletion	Chr11	17374771	17374776	5
Deletion	Chr8	18692744	18692749	5
Deletion	Chr6	20098250	20098317	67
Deletion	Chr9	20260675	20260677	2
Deletion	Chr8	20493886	20493904	18
Deletion	Chr10	21967505	21967507	2
Deletion	Chr11	27004305	27004309	4
Deletion	Chr6	30465739	30465740	1	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes