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| Mutant Information |
|---|
| Mutant Name | FN1224-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1224-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 21771631 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 14654960 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26246292 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26371334 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 31638731 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 7682138 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9792384 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 15247843 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 26564622 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 26564623 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 35655881 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 35726650 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 36336690 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 4347487 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 4053195 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 22637449 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 22637450 | G-T | Hetero | INTRON | |
| SBS | Chr7 | 15638941 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 28349749 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 5270869 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 7716243 | T-C | Homo | INTRON | |
| SBS | Chr8 | 15972878 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 251018 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 3051020 | A-C | Homo | INTRON | |
| SBS | Chr10 | 12344799 | C-T | Homo | INTRON | |
| SBS | Chr10 | 16616024 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr10 | 22484670 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 28698628 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8894822 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 23110361 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 23472852 | A-T | Hetero | INTERGENIC |
Deletions: 20
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 1364001 | 1381000 | 16999 | OsKitaake05g017100 |
| Deletion | Chr12 | 2963416 | 2963420 | 4 | |
| Deletion | Chr1 | 3322220 | 3322233 | 13 | OsKitaake01g043300 |
| Deletion | Chr9 | 7347446 | 7347449 | 3 | |
| Deletion | Chr5 | 7817849 | 7817851 | 2 | |
| Deletion | Chr9 | 8068031 | 8068035 | 4 | OsKitaake09g045400 |
| Deletion | Chr7 | 9009548 | 9009550 | 2 | |
| Deletion | Chr1 | 9643001 | 9658000 | 14999 | OsKitaake01g123400 |
| Deletion | Chr4 | 12386756 | 12386765 | 9 | |
| Deletion | Chr3 | 19122371 | 19122373 | 2 | |
| Deletion | Chr3 | 20182920 | 20182927 | 7 | |
| Deletion | Chr1 | 23255001 | 23271000 | 15999 | OsKitaake01g222400 |
| Deletion | Chr1 | 23692627 | 23692628 | 1 | |
| Deletion | Chr4 | 24460001 | 24473000 | 12999 | |
| Deletion | Chr2 | 25983093 | 25983095 | 2 | |
| Deletion | Chr12 | 26724001 | 26734000 | 9999 | OsKitaake12g222100 |
| Deletion | Chr1 | 28382156 | 28382161 | 5 | OsKitaake01g274800 |
| Deletion | Chr5 | 30258420 | 30258421 | 1 | |
| Deletion | Chr2 | 30756655 | 30756656 | 1 | |
| Deletion | Chr1 | 35222976 | 35222978 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 13485807 | 13485809 | 1 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 24735806 | Chr4 | 25597356 | OsKitaake04g177100 |
| Translocation | Chr8 | 24736200 | Chr4 | 25597297 | OsKitaake04g177100 |