Search Kitaake

Mutant Information

Mutant Name	FN1227-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1227-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16193659 G-A Homo INTERGENIC
SBS Chr1 27802550 A-G Hetero INTERGENIC
SBS Chr3 12897059 T-C Hetero INTERGENIC
SBS Chr3 33252345 T-C Hetero INTERGENIC
SBS Chr4 3410254 A-T Hetero INTERGENIC
SBS Chr4 11006795 A-C Hetero INTERGENIC
SBS Chr4 22781852 A-G Hetero INTERGENIC
SBS Chr5 9083259 A-T Hetero INTERGENIC
SBS Chr5 12972845 G-T Hetero INTERGENIC
SBS Chr5 15019476 C-T Hetero INTERGENIC
SBS Chr5 15019477 C-T Hetero INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr6 1356393 A-C Hetero INTERGENIC
SBS Chr6 7304082 G-A Homo SYNONYMOUS_CODING
SBS Chr6 12515781 C-A Hetero INTERGENIC
SBS Chr6 16406739 C-T Hetero INTERGENIC
SBS Chr6 29460604 G-A Homo INTERGENIC
SBS Chr7 23780286 T-G Hetero INTERGENIC
SBS Chr7 28870537 G-T Hetero INTERGENIC
SBS Chr7 29164319 T-A Hetero UTR_3_PRIME
SBS Chr8 17219010 G-C Homo INTERGENIC
SBS Chr8 17291355 A-G Homo INTERGENIC
SBS Chr8 18074367 G-T Homo INTRON
SBS Chr8 19158296 C-T Hetero INTERGENIC
SBS Chr10 88265 G-A Homo INTERGENIC
SBS Chr10 96021 A-G Homo INTERGENIC
SBS Chr10 6624338 A-G Hetero INTRON
SBS Chr10 12803679 G-C Hetero INTERGENIC
SBS Chr10 13735540 A-T Homo INTERGENIC
SBS Chr10 20902490 G-T Hetero INTERGENIC
SBS Chr10 23640341 G-A Hetero INTERGENIC
SBS Chr11 8534596 A-C Hetero INTERGENIC
SBS Chr11 10614313 G-A Hetero INTERGENIC
SBS Chr11 11999659 G-C Hetero INTERGENIC
SBS Chr11 16257271 C-T Hetero INTERGENIC
SBS Chr12 1411976 G-T Hetero INTERGENIC
SBS Chr12 1411981 A-C Hetero INTERGENIC
SBS Chr12 12889733 G-A Hetero INTERGENIC
SBS Chr12 17107143 A-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 200792 200798 6
Deletion Chr1 353355 353359 4
Deletion Chr1 534292 534297 5
Deletion Chr4 3416809 3416811 2
Deletion Chr12 4518011 4518018 7
Deletion Chr8 6739526 6739612 86
Deletion Chr1 9943830 9944012 182
Deletion Chr5 10115001 10143000 27999 OsKitaake05g089901
Deletion Chr5 10147001 10468000 320999
Deletion Chr2 13837961 13837963 2
Deletion Chr5 13988001 14201000 212999 8
Deletion Chr5 16314645 16314646 1
Deletion Chr9 17897001 17913000 15999 3
Deletion Chr11 22665064 22665071 7
Deletion Chr6 25526928 25526929 1
Deletion Chr4 33669529 33669531 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 2290130 2290133 2
Insertion Chr4 21052268 21052271 2
Insertion Chr6 30677758 30677761 2
Insertion Chr5 9944344 9944346 1
Insertion Chr5 15513322 15513324 1
Insertion Chr11 11259765 11259768 2 OsKitaake11g107900

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 14201400 15017171
Inversion Chr12 24443673 24502415
Inversion Chr12 24443684 24502415

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 9471657 Chr2 31624742 OsKitaake02g321880
Translocation Chr3 26612500 Chr2 6138089
Translocation Chr3 26612937 Chr2 6137965

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16193659	G-A	Homo	INTERGENIC
SBS	Chr1	27802550	A-G	Hetero	INTERGENIC
SBS	Chr3	12897059	T-C	Hetero	INTERGENIC
SBS	Chr3	33252345	T-C	Hetero	INTERGENIC
SBS	Chr4	3410254	A-T	Hetero	INTERGENIC
SBS	Chr4	11006795	A-C	Hetero	INTERGENIC
SBS	Chr4	22781852	A-G	Hetero	INTERGENIC
SBS	Chr5	9083259	A-T	Hetero	INTERGENIC
SBS	Chr5	12972845	G-T	Hetero	INTERGENIC
SBS	Chr5	15019476	C-T	Hetero	INTERGENIC
SBS	Chr5	15019477	C-T	Hetero	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	1356393	A-C	Hetero	INTERGENIC
SBS	Chr6	7304082	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr6	12515781	C-A	Hetero	INTERGENIC
SBS	Chr6	16406739	C-T	Hetero	INTERGENIC
SBS	Chr6	29460604	G-A	Homo	INTERGENIC
SBS	Chr7	23780286	T-G	Hetero	INTERGENIC
SBS	Chr7	28870537	G-T	Hetero	INTERGENIC
SBS	Chr7	29164319	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	17219010	G-C	Homo	INTERGENIC
SBS	Chr8	17291355	A-G	Homo	INTERGENIC
SBS	Chr8	18074367	G-T	Homo	INTRON
SBS	Chr8	19158296	C-T	Hetero	INTERGENIC
SBS	Chr10	88265	G-A	Homo	INTERGENIC
SBS	Chr10	96021	A-G	Homo	INTERGENIC
SBS	Chr10	6624338	A-G	Hetero	INTRON
SBS	Chr10	12803679	G-C	Hetero	INTERGENIC
SBS	Chr10	13735540	A-T	Homo	INTERGENIC
SBS	Chr10	20902490	G-T	Hetero	INTERGENIC
SBS	Chr10	23640341	G-A	Hetero	INTERGENIC
SBS	Chr11	8534596	A-C	Hetero	INTERGENIC
SBS	Chr11	10614313	G-A	Hetero	INTERGENIC
SBS	Chr11	11999659	G-C	Hetero	INTERGENIC
SBS	Chr11	16257271	C-T	Hetero	INTERGENIC
SBS	Chr12	1411976	G-T	Hetero	INTERGENIC
SBS	Chr12	1411981	A-C	Hetero	INTERGENIC
SBS	Chr12	12889733	G-A	Hetero	INTERGENIC
SBS	Chr12	17107143	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	200792	200798	6
Deletion	Chr1	353355	353359	4
Deletion	Chr1	534292	534297	5
Deletion	Chr4	3416809	3416811	2
Deletion	Chr12	4518011	4518018	7
Deletion	Chr8	6739526	6739612	86
Deletion	Chr1	9943830	9944012	182
Deletion	Chr5	10115001	10143000	27999	OsKitaake05g089901
Deletion	Chr5	10147001	10468000	320999
Deletion	Chr2	13837961	13837963	2
Deletion	Chr5	13988001	14201000	212999	8
Deletion	Chr5	16314645	16314646	1
Deletion	Chr9	17897001	17913000	15999	3
Deletion	Chr11	22665064	22665071	7
Deletion	Chr6	25526928	25526929	1
Deletion	Chr4	33669529	33669531	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	14201400	15017171
Inversion	Chr12	24443673	24502415
Inversion	Chr12	24443684	24502415

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes