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| Mutant Information |
|---|
| Mutant Name | FN1234-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1234-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7241392 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 17282307 | A-T | Homo | INTERGENIC | |
| SBS | Chr1 | 18071406 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 24652074 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 24918092 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 24918094 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 24918099 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 5129853 | C-T | Homo | INTRON | |
| SBS | Chr2 | 26852516 | A-G | Homo | INTRON | |
| SBS | Chr3 | 2849695 | A-C | Hetero | INTRON | |
| SBS | Chr3 | 2970665 | T-G | Homo | INTRON | |
| SBS | Chr3 | 37159126 | G-T | Hetero | INTRON | |
| SBS | Chr4 | 8215422 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 27389033 | G-A | Hetero | START_GAINED | |
| SBS | Chr4 | 34215085 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 34215086 | G-A | Hetero | INTRON | |
| SBS | Chr5 | 635818 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 7422141 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 21131512 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 23281094 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 29093234 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 10814522 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 18674810 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 20106817 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 808583 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 8066467 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 25475870 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 2697891 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 9008815 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 18199957 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 198072 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 14778263 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 3564060 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7830060 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21127435 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 22476135 | C-T | Homo | INTRON |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 2704823 | 2704826 | 3 | |
| Deletion | Chr1 | 7633623 | 7633624 | 1 | |
| Deletion | Chr4 | 8096976 | 8096977 | 1 | |
| Deletion | Chr12 | 13661617 | 13661619 | 2 | |
| Deletion | Chr5 | 15426733 | 15426735 | 2 | OsKitaake05g118300 |
| Deletion | Chr9 | 15554831 | 15554928 | 97 | |
| Deletion | Chr7 | 16021336 | 16021339 | 3 | |
| Deletion | Chr12 | 19123522 | 19123524 | 2 | |
| Deletion | Chr5 | 19679216 | 19679229 | 13 | |
| Deletion | Chr3 | 20337876 | 20337877 | 1 | |
| Deletion | Chr8 | 21603307 | 21603312 | 5 | |
| Deletion | Chr6 | 23775636 | 23775638 | 2 | |
| Deletion | Chr1 | 25298807 | 25298808 | 1 | |
| Deletion | Chr11 | 27710449 | 27710450 | 1 | |
| Deletion | Chr6 | 30234001 | 30256000 | 21999 | 3 |
| Deletion | Chr6 | 30263001 | 30329000 | 65999 | 12 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 7986844 | 7986846 | 1 | |
| Insertion | Chr3 | 16528056 | 16528059 | 2 | |
| Insertion | Chr11 | 4360869 | 4360872 | 2 | |
| Insertion | Chr5 | 21767326 | 21767332 | 5 |