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| Mutant Information |
|---|
| Mutant Name | FN1240-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1240-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11083641 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 15237482 | G-A | Homo | INTRON | |
| SBS | Chr1 | 27643169 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 33231024 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 41822750 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 12483186 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 21406481 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 924240 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 5197390 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 20916596 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 15733788 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 21644940 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22486077 | C-G | Hetero | INTRON | |
| SBS | Chr5 | 22220957 | A-T | Homo | INTERGENIC | |
| SBS | Chr6 | 5823116 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 17428793 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 9612748 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 13225020 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 22457790 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 29365051 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 5163582 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17063635 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18828240 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr8 | 21644526 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 6182753 | C-A | Hetero | INTRON | |
| SBS | Chr9 | 6182756 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 11454175 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 706281 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 10881850 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 679840 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2055990 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 3516201 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16712823 | T-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 16761875 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26160859 | T-A | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 5581001 | 5634000 | 52999 | 5 |
| Deletion | Chr6 | 7489307 | 7489308 | 1 | |
| Deletion | Chr12 | 9057067 | 9057069 | 2 | |
| Deletion | Chr8 | 10683908 | 10683912 | 4 | |
| Deletion | Chr5 | 12940261 | 12940264 | 3 | |
| Deletion | Chr8 | 14701967 | 14701969 | 2 | |
| Deletion | Chr12 | 21512064 | 21512072 | 8 | |
| Deletion | Chr9 | 21793001 | 21827000 | 33999 | OsKitaake09g192900 |
| Deletion | Chr4 | 24769459 | 24769462 | 3 | |
| Deletion | Chr2 | 25208001 | 25267000 | 58999 | 8 |
| Deletion | Chr5 | 25688759 | 25688782 | 23 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 15864378 | 15864381 | 2 | |
| Insertion | Chr9 | 1077623 | 1077626 | 2 | |
| Insertion | Chr9 | 2754472 | 2754474 | 1 | |
| Insertion | Chr11 | 18736078 | 18736082 | 3 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 22610951 | Chr2 | 25207837 | 2 |
| Translocation | Chr2 | 25251142 | Chr1 | 44257968 | OsKitaake01g494600 |