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Mutant Information

Mutant Name	FN1243-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1243-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8168050 C-G Hetero INTERGENIC
SBS Chr1 16726600 T-C Homo INTERGENIC
SBS Chr1 17277572 G-C Homo INTERGENIC
SBS Chr1 17706438 A-C Homo INTRON
SBS Chr1 22424426 A-G Homo INTERGENIC
SBS Chr1 25334217 T-G Hetero INTERGENIC
SBS Chr1 25633425 G-A Homo INTERGENIC
SBS Chr1 29765450 C-T Hetero INTERGENIC
SBS Chr2 2666345 A-G Hetero INTERGENIC
SBS Chr2 4840642 T-C Hetero INTRON
SBS Chr2 9920057 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 18389005 G-C Hetero INTRON
SBS Chr2 18576319 A-G Hetero INTERGENIC
SBS Chr3 53791 G-A Homo INTERGENIC
SBS Chr3 19105757 G-C Homo INTERGENIC
SBS Chr3 21292668 G-T Hetero INTERGENIC
SBS Chr3 29907284 A-T Hetero INTERGENIC
SBS Chr3 30084677 A-G Hetero INTERGENIC
SBS Chr4 16125734 C-T Homo INTERGENIC
SBS Chr4 31594098 T-G Homo INTRON
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr5 10090276 G-A Hetero INTERGENIC
SBS Chr5 12127964 C-G Hetero INTERGENIC
SBS Chr5 14550754 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g110900
SBS Chr6 10466933 G-A Hetero INTERGENIC
SBS Chr6 10466934 A-T Hetero INTERGENIC
SBS Chr6 20145678 C-T Homo INTERGENIC
SBS Chr6 23204291 G-T Homo INTERGENIC
SBS Chr6 23950495 T-C Homo INTRON
SBS Chr8 13791562 T-C Hetero INTERGENIC
SBS Chr8 13808666 A-C Hetero INTERGENIC
SBS Chr9 12497340 T-C Hetero INTERGENIC
SBS Chr11 769449 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g009700
SBS Chr11 10120806 T-C Hetero INTRON
SBS Chr11 11371526 G-T Homo INTERGENIC
SBS Chr11 15125781 G-C Homo INTERGENIC
SBS Chr12 11365981 T-A Hetero INTERGENIC
SBS Chr12 13309522 G-A Hetero INTERGENIC
SBS Chr12 15269048 G-A Hetero INTERGENIC
SBS Chr12 15952852 C-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2927240 2927242 2
Deletion Chr5 9586001 9734000 147999 8
Deletion Chr9 18646001 18686000 39999 7
Deletion Chr2 21065563 21065567 4
Deletion Chr5 22443638 22443639 1
Deletion Chr2 23603345 23603348 3
Deletion Chr11 24327050 24327051 1
Deletion Chr2 25057569 25057571 2
Deletion Chr1 26176155 26176157 2
Deletion Chr4 27820421 27820432 11
Deletion Chr8 28506548 28506550 2
Deletion Chr2 36409570 36409575 5
Deletion Chr3 36633162 36633171 9

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35912871 35912874 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 18647852 Chr3 32791866 OsKitaake03g348300
Translocation Chr9 18685335 Chr3 32791830 2
Translocation Chr11 18922563 Chr1 22335584
Translocation Chr11 18922576 Chr1 20819263

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8168050	C-G	Hetero	INTERGENIC
SBS	Chr1	16726600	T-C	Homo	INTERGENIC
SBS	Chr1	17277572	G-C	Homo	INTERGENIC
SBS	Chr1	17706438	A-C	Homo	INTRON
SBS	Chr1	22424426	A-G	Homo	INTERGENIC
SBS	Chr1	25334217	T-G	Hetero	INTERGENIC
SBS	Chr1	25633425	G-A	Homo	INTERGENIC
SBS	Chr1	29765450	C-T	Hetero	INTERGENIC
SBS	Chr2	2666345	A-G	Hetero	INTERGENIC
SBS	Chr2	4840642	T-C	Hetero	INTRON
SBS	Chr2	9920057	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	18389005	G-C	Hetero	INTRON
SBS	Chr2	18576319	A-G	Hetero	INTERGENIC
SBS	Chr3	53791	G-A	Homo	INTERGENIC
SBS	Chr3	19105757	G-C	Homo	INTERGENIC
SBS	Chr3	21292668	G-T	Hetero	INTERGENIC
SBS	Chr3	29907284	A-T	Hetero	INTERGENIC
SBS	Chr3	30084677	A-G	Hetero	INTERGENIC
SBS	Chr4	16125734	C-T	Homo	INTERGENIC
SBS	Chr4	31594098	T-G	Homo	INTRON
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr5	10090276	G-A	Hetero	INTERGENIC
SBS	Chr5	12127964	C-G	Hetero	INTERGENIC
SBS	Chr5	14550754	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g110900
SBS	Chr6	10466933	G-A	Hetero	INTERGENIC
SBS	Chr6	10466934	A-T	Hetero	INTERGENIC
SBS	Chr6	20145678	C-T	Homo	INTERGENIC
SBS	Chr6	23204291	G-T	Homo	INTERGENIC
SBS	Chr6	23950495	T-C	Homo	INTRON
SBS	Chr8	13791562	T-C	Hetero	INTERGENIC
SBS	Chr8	13808666	A-C	Hetero	INTERGENIC
SBS	Chr9	12497340	T-C	Hetero	INTERGENIC
SBS	Chr11	769449	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g009700
SBS	Chr11	10120806	T-C	Hetero	INTRON
SBS	Chr11	11371526	G-T	Homo	INTERGENIC
SBS	Chr11	15125781	G-C	Homo	INTERGENIC
SBS	Chr12	11365981	T-A	Hetero	INTERGENIC
SBS	Chr12	13309522	G-A	Hetero	INTERGENIC
SBS	Chr12	15269048	G-A	Hetero	INTERGENIC
SBS	Chr12	15952852	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2927240	2927242	2
Deletion	Chr5	9586001	9734000	147999	8
Deletion	Chr9	18646001	18686000	39999	7
Deletion	Chr2	21065563	21065567	4
Deletion	Chr5	22443638	22443639	1
Deletion	Chr2	23603345	23603348	3
Deletion	Chr11	24327050	24327051	1
Deletion	Chr2	25057569	25057571	2
Deletion	Chr1	26176155	26176157	2
Deletion	Chr4	27820421	27820432	11
Deletion	Chr8	28506548	28506550	2
Deletion	Chr2	36409570	36409575	5
Deletion	Chr3	36633162	36633171	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	18647852	Chr3	32791866	OsKitaake03g348300
Translocation	Chr9	18685335	Chr3	32791830	2
Translocation	Chr11	18922563	Chr1	22335584
Translocation	Chr11	18922576	Chr1	20819263

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes